BAC Information

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BAC

Clone NameMSMg01-406D17
Chromosome1 (Build37)
Map Location 75,463,475 - 75,463,996
singlet/doubletsinglet
Overlap geneAccn4
Upstream geneVil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa
Downstream geneD1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406D17.T7 (MSMg01no406_d17.b1)MSMg01-406D17.TJ (MSMg01no406_d17.g1)
ACCAG504475AG504476
length717741
length of high quality
(start - end)
554 (53 - 606)240 (83 - 322)
definitionCHROMAT_FILE: MSMg01no406_d17.b1 PHD_FILE: MSMg01no406_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:28 2005CHROMAT_FILE: MSMg01no406_d17.g1 PHD_FILE: MSMg01no406_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTATTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCGAAGTACCTAAGGGGAATACCAGGGACACTTTGAGGG
TAAGGTTTTGTCCTCCCTCCTCTGGTGAGTTGGTTACCTGCAGCTTCACC
AACCTTTCTTCTACACACACACACACCCCAACACCCTCCTCCCTAGTACA
GCCTTTACTCAAACTGATTTCTGAAACAACAACAAAATACGCATAGCAGG
CACCTTGACATTTACAAAACATGAAAACATCCACTGCTACGCTGTGTCAT
CCACCCGGTGCCTCTGACTTCTTGTGTGTTTGATGACCTTGGTTCCAGAG
AAGGAAACTGAGCTCAGAGAGGTGAGGTGACTCTAATGAAGCCACACAGC
TTCAGAGAGGAAGGCTAAGCTCCCCGATACTCCCATCATTCATTGCTTCC
ATCCTTCCAACCCAAACCTACCCAGCTTCTGTCTCAGGATGGGAAAAGAC
AGACTGTGCCTCACACTGGAACTTCTTTCCTTGGTTCCTCTTTCCCTTCA
GCTCCATTCTTCAGCCCCATCCTCCCAAGGACATTTGCCTTTCCCTTCCT
CGCCGGGCCTTCACAGTTTCTGGGTTCTAGTCTCATCCCAACCCCATCTT
CCGTCTGTACCCTCCATCACTGCATGTCCCTGAGAACAGGAGTGGTGATC
CCAGACATCTCATAGCG
ACCCTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTAGACCAGGCTG
GCCTTGAACTCACAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGAT
TCCAGGATGTGTTACCTCATCCAGCCTAAACTCAGCTTTTTTATTTTTTT
AAAGATTTATTTATTTTATGTATATGAGTACATTGTTGTTATCTTCAGGC
ACACCAGAAGAGGGCACCAGATCCCATTACAGATGGTTGTGAGCCACCAT
GTGGTTGTTGGCAATTGAACTCTTTACCTCTGGAAGAGCAGTCAGCGCTC
TTAACCGCTGAACCACCTCTCCAGCCCCTTAGATCTATTTGCATTTTGTG
TCTATGGGTGTTTCGCCTGCTTCGATGTCTAACCTGGATTAGTAGGTCTT
TCTAAAGTGGCTTGATCCGAATATCGTGAGGATGATTAAATATATGTATC
CCCACCTTTGTCATATAAATTTTTTTTCATCTTCCGCTTCATTTTTGATT
CATTTTTTCTCCTTCATTACCTCTTTTTCTCGTGATGTGTTTATATTCTT
GTCCTTCATCCTCCATCCATTCGTAATTCACTACCTTTCTTTTTCTTTTT
CTTATTGTTTTTTTTCCTCTGCTCCACCCTTCTCTTATCTCCACTTCTCT
AACTCTCATTCCTTTAGCATATTGTTGCTATCTTCACCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_d17.b1 MSMg01no406_d17.b1 CHROMAT_FILE:
MSMg01no406_d17.b1 PHD_FILE: MSMg01no406_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:28 2005
         (554 letters)



>mm_chr1_75463406_75464360
          Length = 955

 Score =  847 bits (438), Expect = 0.0
 Identities = 505/534 (94%), Gaps = 13/534 (2%)
 Strand = Plus / Minus

                                                                       
Query: 17  acctaaggggaataccagggacactttgagggtaaggttttgtcctccctcctctggtga 76
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 591 acctaaggggaacaccagggacactttgagggtaaggttctgtcctccctcctctggtga 532

                                                                       
Query: 77  gttggttacctgcagcttcaccaacctttcttctacacacacacacaccccaacaccctc 136
           ||||||||| |||||||||||||||||||||||||||||||||||           ||||
Sbjct: 531 gttggttacttgcagcttcaccaacctttcttctacacacacaca-----------cctc 483

                                                                       
Query: 137 ctccctagtacagcctttactcaaactgatttctgaaacaacaacaaaatacgcatagca 196
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctccccagtacagcctttacccaaactgatttctgaaacaacaacaaaatacgcatagca 423

                                                                       
Query: 197 ggcaccttgacatttacaaaacatgaaaacatccactgctacgctgtgtcatccacccgg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggcaccttgacatttacaaaacatgaaaacatccactgctacgctgtgtcatccacccgg 363

                                                                       
Query: 257 tgcctctgacttcttgtgtgtttgatgaccttggttccagagaaggaaactgagctcaga 316
           |||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 362 tgcctctgacttcaggtgtgtttgacgaccttggttccagagaaggaaactgagctcaga 303

                                                                       
Query: 317 gaggtgaggtgactctaatgaagccacacagcttcagagaggaaggctaagctccccgat 376
           ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 302 gaggtgaggtgactctaatgaagccgcacagcttcagagtggaaggctaagctccccgat 243

                                                                       
Query: 377 actcccatcattcattgctt-ccatccttccaacccaaacctacccagcttctgtctcag 435
           ||||||||||||||||| ||  |||||||||||||||||||||||||||||||| |||||
Sbjct: 242 actcccatcattcattg-ttagcatccttccaacccaaacctacccagcttctgcctcag 184

                                                                       
Query: 436 gatgggaaaagacagactgtgcctcacactggaacttctttccttggttcctctttccct 495
           ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gatggaaaaagacggactgtgcctcacactggaacttctttccttggttcctctttccct 124

                                                                 
Query: 496 tcagctccattcttcagccccatcctcccaaggacatttgcctttcccttcctc 549
           ||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 123 tcagctccattcttcagccccatcctcccaaggtcatttgtctttcccttcctc 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space:   514080
Effective search space used:   514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)