Query= MSMg01no406_f03.b1 MSMg01no406_f03.b1 CHROMAT_FILE:
MSMg01no406_f03.b1 PHD_FILE: MSMg01no406_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:35 2005
(561 letters)
>mm_chr1_87474953_87475913
Length = 961
Score = 971 bits (502), Expect = 0.0
Identities = 547/564 (96%), Gaps = 9/564 (1%)
Strand = Plus / Plus
Query: 1 ttccttccaatccctactcaaactcaccaggctaagcttcttaaagctgtttgtttgttt 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 204 ttccttccaatccctactcaaactcaccaggctaagcttcttaaagct-ttt--ttgttt 260
Query: 61 gtttgtttttttgtttgtttcggttttttgagacagggtttctctgtgtagccctggctg 120
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgtttgtttgtttttttcggttttttgagacagggtttctctgtgtagccctggctg 320
Query: 121 tcctggaacttactctgtagaccaggatggcttcaaattcagaaatccatctgcctctgc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tcctggaacttactctgtagaccaggctggcttcaaattcagaaatccatctgcctctgc 380
Query: 181 ctcccaagtgctgagattaaaggcttgtgccaccatgcccggctaagcttcttaaatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcccaagtgctgagattaaaggcttgtgccaccatgcccggctaagcttcttaaatctt 440
Query: 241 acttgattattta--aaccttggcctccattactctcagcatattctgcttgcactaggt 298
||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttgatcac--agcaaccttggcctccattactctcagcatattctgcttgcactaggt 498
Query: 299 cttcatcatgtgcatctatctgtggttctaactttgccatctacaatgttttctgcttga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttcatcatgtgcatctatctgtggttctaactttgccatctacaatgttttctgcttga 558
Query: 359 acatctggctctttgtaagtcatgctgttgagtcaaaatgggaatttatctacatttttg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acatctggctctttgtaagtcatgctgttgagtcaaaatgggaatttatctacatttttg 618
Query: 419 ctattgaatttccacccactcttccaggatatgaatccatcacccttggtcattacaata 478
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 619 ctattgaatttccacccactcttccaggatattaatccatcacccttggtcattacaata 678
Query: 479 cctgctccagatgtcttaatgt-tgccccgttacaacatataacgcccttccagtctttt 537
|||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct: 679 cctgctccagatgtcttaatgtct-ccccgttacaacgtataacgcccttccagtctttt 737
Query: 538 gatgtggcccttctcccttcattt 561
||||||||||||| ||||||||||
Sbjct: 738 gatgtggcccttcccccttcattt 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_f03.g1 MSMg01no406_f03.g1 CHROMAT_FILE:
MSMg01no406_f03.g1 PHD_FILE: MSMg01no406_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:35 2005
(463 letters)
>mm_chr1_85101522_85102385
Length = 864
Score = 804 bits (416), Expect = 0.0
Identities = 454/470 (96%), Gaps = 8/470 (1%)
Strand = Plus / Plus
Query: 1 cacagacagtgcaagggtagcaaagattaatgcagccatccctacgcctgtcagattgat 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cacagacagtgcaagggtagcaaagatcaatgcagccatccctacgcctgtcagattgat 260
Query: 61 aaccacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacagatacctcc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aaccacaacaaaaatgtcttcaaagacagaaactgcaaatactcagagacagatacctcc 320
Query: 121 acctgcttatatgaaaggcactgagccagtgattaaccaccctatttattcccaaaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgcttatatgaaaggcactgagccagtgattaaccaccctatttattcccaaaagac 380
Query: 181 acagcacactgttggtatcactagtggacttgaccaaatgtcacaggagaaatggtgctt 240
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 acagcacactgctggtatcactagtggacttgatcaaatgtcacaggagaaatggtgctt 440
Query: 241 tcttatgtatatctgcaggagcagaagtagccctgactgagtccctgttgggggcatcac 300
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttagg-acatctgcaggagcagaagtagccctgactgagtccctgttgggggcatcac 499
Query: 301 ac--cttcctctcatcttttctatttttattttgaattatgtatgtatgagtctgtctca 358
|| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 acaccttcatctcatcttttctatttttattttgaattatgcatgtatgagtctgtctca 559
Query: 359 gtgtgcttcctgcacgcaagtacagtgtc-----catggaaggcagaaaaggctgtctga 413
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 gtgtgcttcctgcacgcaagtacagtgtcgtgtccatggaaggcagaaaaggctgtctga 619
Query: 414 tctggagttggcatgagaggcagttggaagccctaggataggtgctgggg 463
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctggagttggcatgagaggcagttggaagccctaggataggtgctgggg 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 864
Length adjustment: 10
Effective length of query: 453
Effective length of database: 854
Effective search space: 386862
Effective search space used: 386862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
