Query= MSMg01no406_h01.b1 MSMg01no406_h01.b1 CHROMAT_FILE:
MSMg01no406_h01.b1 PHD_FILE: MSMg01no406_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:45 2005
(272 letters)
>mm_chr1_131684177_131684848
Length = 672
Score = 489 bits (253), Expect = e-143
Identities = 265/269 (98%), Gaps = 2/269 (0%)
Strand = Plus / Minus
Query: 5 gaattctttggtct-cactcctctctggggcttcatttatcctttctgcatttctattta 63
|||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 472 gaattctttggtctcca-tcctctctggggcttcatttatcctttctgtatttctattta 414
Query: 64 atttacaatgactctcttccttacttagaggctgtataatgaaaaatagctggcttttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atttacaatgactctcttccttacttagaggctgtataatgaaaaatagctggcttttat 354
Query: 124 attcaaagcctgatgcttttcacctagatttccacacaggacaggtagataactgggagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 attcaaagcctgatgcttttcacctagatttccacacaggacaggtagataactgggagg 294
Query: 184 aggagatccctccaaaactaagtttgagcatcatggagaatctaacttgaaccaccaaag 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aggagatccctccaaaactaagtttgagcatcatggagaatctaacttgaaccaccaaaa 234
Query: 244 cccacctgaggacatgcccagcatcagta 272
|||||||||||||||||||||||||||||
Sbjct: 233 cccacctgaggacatgcccagcatcagta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_h01.g1 MSMg01no406_h01.g1 CHROMAT_FILE:
MSMg01no406_h01.g1 PHD_FILE: MSMg01no406_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:45 2005
(343 letters)
>mm_chr1_131503366_131504108
Length = 743
Score = 497 bits (257), Expect = e-145
Identities = 327/373 (87%), Gaps = 36/373 (9%)
Strand = Plus / Plus
Query: 1 cctaactaatatgcagaaggctctaggttatatgtctagtatcataaaactgaaaatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cctaactaatatgcagaaggctctaggttatatgtctagtatcataaaactgaaaatagt 236
Query: 61 tactctaatcagcatttatgagcca------------------------------acaca 90
||||||||||||||||||||||||| |||||
Sbjct: 237 tactctaatcagcatttatgagccaacacacacacacacacacacacacacacacacaca 296
Query: 91 cacacacacacacacacacacacacacacctctctacacaaagctagggactgggcaaac 150
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 297 cacacacacacacacacacacacacacacctctatacacaaagcta------gggcaaac 350
Query: 151 tgaaaactaaggactgaggaagactctgagaaaatggtctggtcattgcgttgtcagctg 210
|||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 351 tgaaaactaaggaccgaggaagactctgggaaaatggtctggtcattgtgttgtcagctg 410
Query: 211 atggtgatgtttacctcctgatgagacccacctgtattcaaagagcttttaatttgtgat 270
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 411 atggtgatgtttacctcctgatgagacccacctgtaatcaaagagcttttaatttgtgat 470
Query: 271 ggaagttgcaaccataactcctagtgagagtgctgtgagaaagttgacttttttccatcg 330
|||||| |||||||||| ||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 471 ggaagtcgcaaccataattcctagtgacagtgctgtgagaaagttgaccttgttccatcg 530
Query: 331 tgaagaactgaga 343
|||||||||||||
Sbjct: 531 tgaagaactgaga 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
