NCCATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGGTTTTCGAGGAACCACCATTCAAAATACAATGACTGTAC
CATATTACATTTTGCCTGGTGACATAAGCATCAGTCCATTAGCCCAGCTG
GATACCTATACCTTGTATAGCTCTTTGTTCTTCATGATCCCCACCTCTAC
CTCCACCACCAGGCACCAAGTTGTGTATGTTACCTCAAATAATATACTTC
TGAGTCTGTTTTATCTTCTTATCTTTCTCCCTTCTACTTCCCAGGCTCTT
TTCATATGATCTCCAGAAAAGATCATCCAGCCATCTCAATAACCGTCTAT
ATTTTGAGATCTGCATACAGCACGTTTGTGGACTTGTTCCTGAATTCCCT
TCCACTTCATGCACCCCTACCCTGTATCCTTTTACTTAGCTCCCTGAAAC
CCTTAGGTGCTTTCTGCTTCCTAGATAGCCCATGTTGGGAATGTGTTTAC
GTTTGGAGGCTGAGATAACCTTTCTAAGTTATTTTTCACAAACTTCTTGA
TTCTTTAAGGGTCAGATAACACCTACCCCAGAGAATTGTTTTAACCTTTC
CCAGACTCTGGAAGGGAAGCTTGGAGCCCTTTTTTACATATTGGCCTTCG
TGTTTGCTGCCGTTAATTCTGTTTTACGATATATCTTTATAAAAAAGTAG
TATAGTTATTATTTTCTACTTTCTATTTTTGA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGATCTTTCCTATTCTGT
GCTATCACATAGGTCTTTTTTCTTGTAAAAATCATACAGAAACTGACTAT
GTAGCTCTGGCTGGGCTGGGCTGGAACTCACTCTATTAAACTAGTCTAAA
CTAGCCCAAACTAGTCTTAAACTCACAAAGATCTACTTTCTGAGTGCTGA
AGATTAAAGCCATGTATCACTATGACAGGCATTAATACATTCAAGGGACT
CTGAATCAAAAAATGAATGAGCCAGGTATGGTGACACATAACTTTAATTC
CAGCACGGTGGCAGTGCAGGCAGAGGCAGTCAGATCTCTATGAACTGGAG
GCCAGCCTGTCTACATAGTGAATTACAGGACAGCTAAGGCTATGTAGAGA
GGTCCTGTTTTATAAAATATGATGATGATGATTCTCTGATTTTGTAAAGA
CATGTTAATTTCATTTGTGAGATGTAAACGTGAACACATGGAAAAGGCGA
CGCTGAATGCCGTCTGTTGATTTTGTAATACTTCAGAGTAAGTAGTCCAA
TTGTCCCCACTTTACAGATGACCACGAAGGGACAGAACGCCTCCCTGGAA
ACTAGTCCTCTTCCCTCCCGGAACTTTCTCTGAAACCTCTCCCTTTCTGT
GTCCCTCTTTGGAAAGATAACTTTGTCCTAAGGAACAGTGAAA

Query= MSMg01no406_h22.b1 MSMg01no406_h22.b1 CHROMAT_FILE:
MSMg01no406_h22.b1 PHD_FILE: MSMg01no406_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:49 2005
         (520 letters)



>mm_chr1_177668108_177669027
          Length = 920

 Score =  944 bits (488), Expect = 0.0
 Identities = 512/520 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatacaatgactgtaccatattacattttgcctggtgacataagcatcagtccattagc 60
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatacagtgactgtaccgtattacattttgcctggtgacataagcatcagtccattagc 260

                                                                       
Query: 61  ccagctggatacctataccttgtatagctctttgttcttcatgatccccacctctacctc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ccagctggatacctataccttgtatagctctttgttctttatgatccccacctctacctc 320

                                                                       
Query: 121 caccaccaggcaccaagttgtgtatgttacctcaaataatatacttctgagtctgtttta 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccaccaagcaccaagttgtgtatgttacctcaaataatatacttctgagtctgtttta 380

                                                                       
Query: 181 tcttcttatctttctcccttctacttcccaggctcttttcatatgatctccagaaaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 381 tcttcttatctttctcccttctacttcccaggctcttttcatatggtctccagaacagat 440

                                                                       
Query: 241 catccagccatctcaataaccgtctatattttgagatctgcatacagcacgtttgtggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catccagccatctcaataaccgtctatattttgagatctgcatacagcacgtttgtggac 500

                                                                       
Query: 301 ttgttcctgaattcccttccacttcatgcacccctaccctgtatccttttacttagctcc 360
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ttgtccctgaattcccttccacttcatgcacccctaccctgtagccttttacttagctcc 560

                                                                       
Query: 361 ctgaaacccttaggtgctttctgcttcctagatagcccatgttgggaatgtgtttacgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaaacccttaggtgctttctgcttcctagatagcccatgttgggaatgtgtttacgtt 620

                                                                       
Query: 421 tggaggctgagataacctttctaagttatttttcacaaacttcttgattctttaagggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaggctgagataacctttctaagttatttttcacaaacttcttgattctttaagggtc 680

                                                   
Query: 481 agataacacctaccccagagaattgttttaacctttccca 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agataacacctaccccagagaattgttttaacctttccca 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)