BAC Information

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BAC

Clone NameMSMg01-406J08
Chromosome1 (Build37)
Map Location 124,645,580 - 124,645,819
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406J08.T7 (MSMg01no406_j08.b1)MSMg01-406J08.TJ (MSMg01no406_j08.g1)
ACCAG504744AG504745
length754755
length of high quality
(start - end)
39 (252 - 290)240 (77 - 316)
definitionCHROMAT_FILE: MSMg01no406_j08.b1 PHD_FILE: MSMg01no406_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:56 2005CHROMAT_FILE: MSMg01no406_j08.g1 PHD_FILE: MSMg01no406_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAAAATTTGCGGCGCNAAANGAGNCACAAATTCCGATCCGGGNGGNAN
NCNGNGNATTTCANTCACGCAGCGGANNCCNNNNNGANNAGNCCNNNGAA
AACNCGGNGGANCTCTCCCCCCCAAAACANAAANNAAAAAAACCGGCCCG
GCCNCAAAGACGGGGGAGAGACGGGGCCAGGANCAAGCCCCNCCAGAAAA
AGGCAAAAGGAGCCGGAAAGGGAGCCAAGCGCNACAAACAGGATATTTTG
ATTTTCATCTCTAGCACCTAAAGAAACTGGGCATGGTGGCATGTTCTTGG
GACCAAAGCTCTTTTTTTTTGGNAAAAGACAGAACCCAAGAGCCCCGAAA
AGCCTGGCAAGGCCCCCCGCGCAACCCCAGGACAACGAAAGACCCGGCCC
CAGCGACCAAGAACCAAAGCCCCCAGGAAAAGGCCAGAGGCCGACCCCCG
ACACCCACAGCCAAACACAAAAAGCGACACCCACAAACACAGGGGCCCCC
GCAGAGGAACACAAACACAAACGGGCACACCCCCACAACCCGCGAACCGC
CCAAAAGCAAACCCAACCCCCCGAGCAAAAGCGGCCCACGCGACAGACAC
GCCGAGACCACCCCAAGACCCACCCCGGCCCCCACCAACGCAAAGCGACG
TTCTATCTTATTGTTTGGCGGCTTGATAAAAACAATCTCTTATCCCACTG
GTTTCTGGTTTTCACCTGATTCCTCCTACTTCCCCTCCGTATTCGTATTC
TCCG
TCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGGCCATTTTTAAATGGATTTT
AGGGATTTGAACCCAGGTAAACATGCTTGCCTGGGAAGACTTTAGCTCAT
TGAGCTATCTACCCAGCATAGAGATAGCATGACTGTATATAATTAAAGCT
TCTTCTTTTATTTTTTCTGCTAACCATCTATTTTCTTTGCATAGGGCTCT
ACAAGATATCTAACAACTTAACATTAAACATACTATTTTCTGTAATGTTA
ATGAATTCCAATCTTTAGATCTTTTTTTTTAAAATCATTATCTACCAATA
CATTGGCATATTTATAGCTATCCTGAGATGCATGCAGTCCTTCCAGATTG
GACATGTCTGAAAATATAGACAATTTTCTGTCTCATGACCCAAGGGTTCT
TACTAGCCATTATATAATAGCATCGGCCATTTCACAAGTTATGAAAGCCC
CGAAGGCAATGCCAAATTCTCTGTCTACTTTTTTTCTGGTACCCCCTTCT
ACTATTTATCCTAGTCTTATGCCCTTAATTTTTACCCTTCTGTGGTTCCT
GTTCTTTTTCTATTCCTTTTGACCTTTTTTATTTATTGGGTTATCTTCCG
TTCCCCCCGACTCTTCCCTTTTTTCCTTCCTCCCTCCTCGATCGAACCAT
CCATCCTCTTTTTTTTACCTGTTTACCTATGGTTCACCCTTTTTTTCTGT
TTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_j08.g1 MSMg01no406_j08.g1 CHROMAT_FILE:
MSMg01no406_j08.g1 PHD_FILE: MSMg01no406_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:57 2005
         (240 letters)



>mm_chr1_124645289_124645928
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggccatttttaaatggattttagggatttgaacccaggtaaacatgcttgcctggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tatggccatttttaaatggattttagggatttgaacccaggtaaacatgcttgcctggga 472

                                                                       
Query: 61  agactttagctcattgagctatctacccagcatagagatagcatgactgtatataattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agactttagctcattgagctatctacccagcatagagatagcatgactgtatataattaa 412

                                                                       
Query: 121 agcttcttcttttattttttctgctaaccatctattttctttgcatagggctctacaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agcttcttcttttattttttctgctaaccatctattttctttgcatagggctctacaaga 352

                                                                       
Query: 181 tatctaacaacttaacattaaacatactattttctgtaatgttaatgaattccaatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tatctaacaacttaacattaaacatactattttctgtaatgttaatgaattccaatcttt 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)