BAC Information

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BAC

Clone NameMSMg01-406J18
Chromosome1 (Build37)
Map Location 12,001,386 - 12,001,791
singlet/doubletsinglet
Overlap genenone
Upstream geneC030045D06Rik, A830018L16Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406J18.T7 (MSMg01no406_j18.b1)MSMg01-406J18.TJ (MSMg01no406_j18.g1)
ACCAG504763AG504764
length787748
length of high quality
(start - end)
114 (75 - 188)412 (79 - 490)
definitionCHROMAT_FILE: MSMg01no406_j18.b1 PHD_FILE: MSMg01no406_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:59 2005CHROMAT_FILE: MSMg01no406_j18.g1 PHD_FILE: MSMg01no406_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGGGGTGACGGGATGAATCCAGGGGTGGCTGGCAACAGGCAA
TTGACCAAAAGACGGGGCTTATATAGGATTTCACAGCAGGTAGACTTTGG
GGGGGGTGCAGAGATTTTTAGAGTGAGGATTGGTGGGATTTCAAGCAGCT
AATCCTTGGGCCCAACGCTGGGGAAAAGGGAGGTGAATAGAAGCCATCTT
TTTCTGACCTCTTTAAGTTCATGACACTAAATCATGAAGACCATCTGTTT
GGGACCACCACGACTTTTTTGTTGTTTCCAGAGTCAGCTTGTGCTACATT
ACAGCAGTTTTTTTCTCCCTCCCTCCCCCCCCCTTTCTTTTTCTACCTTG
ACCACCCCCCCCTGAACCCTTGCGGCGTCTCTTGCTCCTACTCCCCTCCT
CTGTCCCCGCTTATCCTACCTCATTTTCGTCCCTTTTTTTCCTCCCTCTC
CTCCCTTGCGATTTCTCCCCCCTCTCCTTTCCTTCTTCTCCTCTATTCCC
CCTTTTTGCCCCCCCCCTTTCTTCCTCCCCTCCTCCTTCTCCCTCCGCTT
CTCCCTTTTCTTTTTTCTTTCTTCTTCCCTCTTCTATTTTTCCCTCTTGC
TTCCTCTCCCCTCCCCCTTTTCTTTTTCCCTTCGCTCTCATTANCCCTTC
TTTTTATTTTCTCTTTGTCCCGTCCTTCTTTCTTTTTTTATTCTATCTAT
TCTCACCCTATTCCCCTCTCCTCTTCCTTCTCTTATG
TCCGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGGATGATGCCAATTTTGA
AGTGTCAGCTTTCTAACACTTTGGTTATAACCTGAGAAATTCTATCTCTG
TTGCAAGAAAATACAGCACATTTAGGGGACCAGGGGGTCAGAAGCATCTG
AAAAGACTCCATGAACTCCCTCTAGGTATTCAAGCCCACTCTTCATACCA
TTCCTTACCTTTGAATGAGGACTAGACATGCAGGCTCACATCTAATACAC
AGAGTACAACAATGATGATGCGCTACAGTTTTTGAGATTAGGCAGTAACA
GACTGACACACACTTTAGCTAGATTTGTGGGCTCATGTTGATGAAAAGGG
AAGTCGTAAGAAGTTGAGAGCTGTTTTCAACCTCTAGCATACAATAAATT
GAAATCCTAACTCTCACAGCCTCAAAAGCCCAACATCTTCATGAGAAGGC
TGGGAGTTGATCCTAACCTGTAGCTTGCCCTCACATGCAGATCTAGCCAA
AGTCTTATCTGCAGCCTGTGAGGGAAATGCGTACTGATGAACTAGTTAAG
CCTGGATGATTTCCCTGAGATCATGATATGCCACGCCTGAATGCTGTCCC
TACACCTGGTTAATAGGTCGCTTGATTTTTTGTCCCTTGGCTCCTTTTCC
CCCTGTTCGTTTTGCCTCTGCACTTTTTCCCCATTTGTAGATTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_j18.g1 MSMg01no406_j18.g1 CHROMAT_FILE:
MSMg01no406_j18.g1 PHD_FILE: MSMg01no406_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:59 2005
         (412 letters)



>mm_chr1_12001186_12001997
          Length = 812

 Score =  737 bits (381), Expect = 0.0
 Identities = 401/409 (98%), Gaps = 3/409 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcgggatgatgccaattttgaagtgtcagctttctaacactttggttataacctgagaa 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttcgggatgatgccaattttgaagtgtcagttttctaacactttggttataacctgagaa 260

                                                                       
Query: 61  attctatctctgttgcaagaaaatacagcacatttaggggaccagggggtcagaagcatc 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 attctatctctgttgcaagaaaatacagcacatttaggggaccaggggttcagaagcatc 320

                                                                       
Query: 121 tgaaaagactccatgaactccctctaggtattcaagcccactcttcataccattccttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaagactccatgaactccctctaggtattcaagcccactcttcataccattccttac 380

                                                                       
Query: 181 ctttgaatgaggactagacatgcaggctcacatctaatacacagagtacaacaatgatga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 381 ctttgaatgaggactagacatgcaggctcacatctaatacacagagtacaa---tgatga 437

                                                                       
Query: 241 tgcgctacagtttttgagattaggcagtaacagactgacacacactttagctagatttgt 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgcactacagtttttgagattaggcagtaacagactgacacacactttagctagatttgt 497

                                                                       
Query: 301 gggctcatgttgatgaaaagggaagtcgtaagaagttgagagctgttttcaacctctagc 360
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 498 gggctcatgttgatgaaaagggaagtcataagaagttgagagctattttcaacctctagc 557

                                                            
Query: 361 atacaataaattgaaatcctaactctcacagcctcaaaagcccaacatc 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atacaataaattgaaatcctaactctcacagcctcaaaagcccaacatc 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)