BAC Information

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BAC

Clone NameMSMg01-406J24
Chromosome1 (Build37)
Map Location 23,967,382 - 23,967,747
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2, Smap1
Downstream gene1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406J24.T7 (MSMg01no406_j24.b1)MSMg01-406J24.TJ (MSMg01no406_j24.g1)
ACCAG504775AG504776
length739754
length of high quality
(start - end)
419 (78 - 496)352 (80 - 431)
definitionCHROMAT_FILE: MSMg01no406_j24.b1 PHD_FILE: MSMg01no406_j24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:00 2005CHROMAT_FILE: MSMg01no406_j24.g1 PHD_FILE: MSMg01no406_j24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCG
CGGAATTCTTTGTTTATCTCTGAGCCCCATTTTTTAAGGGGGTTATTCGA
TTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC
CTTTTTGTCTTATTGACTATGTCTTTTGCCTTACAGAAGCTTTGCAATTT
TATGAGGTCCCATTTGTTGATTCCCGATCTTACGGCACAACCATTGCTGT
TCTATTCAGGAAATTTTCCCCTGTGTCCATATCTTCGGGGCTTTTCACCA
CTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTGGAGTTCCTTG
ATCCACTTAGGTGTGACCTTAGTACAAGGAGATAGGAATGGGTCAATTCG
CATTCTTCTGTATGATAACCACCAGTTGTGGCAGCACCATTTGTTGAAAA
TGCTGTCGCTTTTCCACTGGATGGGTTTAGCTCCCTTGTCATATGTCAAG
TGACCATAGGTGTGTGTGTTCATTTCTGGCCCTTCCAATTTATTCCTTTG
GTCAATGTATTATATTTCCATCTATTCCGTCCCCTTATTCGCTCCTTGTT
CTCTTTTTTTCTTTTTTCCCTCGCCCCAACTCCTTATCCCCATACTTTGT
GTCTTTCTTCTCTTATTTCTTTTCTTTTCCCTCTCTCCT
NCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAGTAGAGACAACAAAAAT
CTGTGTATTGGGCTAGAACTTAAAATATATTACCCTAAGAATTCTTTAAA
ATTTAAATATATATATATATATATATTCTTTTGGTTTTTAAACTAGCGAT
TTTGTATTTTAAATAATTTAGGGTTTGTAATAATTGGGGATGCAACTTGT
GTGTTCTAGTAGCTTGCTGGAAAATTCTATCAATCTACTTAGTTATTTAC
ATTTTCTTATATGGGACAGTCTGTGGCAGTAGGTGAAAAGACACAGGACC
TATCTGTGTTCGGCTCTGCTGCCCTTGGTATATTGGTTGCTTCTTCATAT
TCTTTTCTTTATGCCATTATGTGACTGCTGTAGGCTGGTGCTGGAGTCAC
CACATCTAAGTTTCCGGGTGGAAAAGGGGGTGTTCAGATGTCCAGTACAT
CTTTATATGTTTTTCTTCTGAGGAGAGTCGTCTTTCATTCTTATTATTGT
ATATGAGGAGAATATGCCCTTAGTCTTGCCTCTTTTATATACGCCTGTCT
CCTTCTTGTACTTTGTTTGTTGTTTCTCCCTTCTCTTTGTCTCCTACTCT
CTCTCGTTTATTTACCCTATCTCCCTGAATTCGTGGCTCCCTTCGTTATG
AACCTCTCCTTTTTCCCACTTCCCCATACTTTGACTCTTTATCTCACTTT
TCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_j24.g1 MSMg01no406_j24.g1 CHROMAT_FILE:
MSMg01no406_j24.g1 PHD_FILE: MSMg01no406_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:00 2005
         (352 letters)



>mm_chr1_23967201_23967952
          Length = 752

 Score =  630 bits (326), Expect = 0.0
 Identities = 350/366 (95%), Gaps = 15/366 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagtagagacaacaaaaatctgtgtattgggctagaacttaaaatatattaccctaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aacagtagagacaacaaaaatctgtgtattgggctagaacttaaaatatattaccctaag 488

                                                                       
Query: 61  aattctttaaaatttaa--------atatatatatatatatatattcttttggtttttaa 112
           |||||||||||||||||        |||||||||||||||||||||||||||||||||||
Sbjct: 487 aattctttaaaatttaaatatatatatatatatatatatatatattcttttggtttttaa 428

                                                                       
Query: 113 actagcgattttgtattttaaataatttagggtttgtaataattggggatgcaacttgtg 172
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aatagcgattttgtattttaaataatttagggtttgtaataattggggatgcaacttgtg 368

                                                                       
Query: 173 tgttctagtagcttgctggaaaattctatcaatctacttagttatttacattttcttata 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgttctagtagcttgctggaaaattctatcaatctacttagttatttacattttcttata 308

                                                                       
Query: 233 tgggacagtc----t---gtggcagtaggtgaaaagacacaggacctatctgtgttcggc 285
           ||||||||||    |   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgggacagtcagaatcaagtggcagtaggtgaaaagacacaggacctatctgtgttcggc 248

                                                                       
Query: 286 tctgctgcccttggtatattggttgcttcttcatattcttttctttatgccattatgtga 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctgctgcccttggtatattggttgcttcttcatattcttttctttatgccattatgtga 188

                 
Query: 346 ctgctg 351
           ||||||
Sbjct: 187 ctgctg 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)