BAC Information

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BAC

Clone NameMSMg01-406K09
Chromosome1 (Build37)
Map Location 137,384,552 - 137,384,790
singlet/doubletsinglet
Overlap geneNav1
Upstream geneKlhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9
Downstream geneEG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406K09.T7 (MSMg01no406_k09.b1)MSMg01-406K09.TJ (MSMg01no406_k09.g1)
ACCAG504793AG504794
length758745
length of high quality
(start - end)
114 (123 - 236)239 (76 - 314)
definitionCHROMAT_FILE: MSMg01no406_k09.b1 PHD_FILE: MSMg01no406_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:02 2005CHROMAT_FILE: MSMg01no406_k09.g1 PHD_FILE: MSMg01no406_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTTATAATTTGCGGCGNAANAGAANCACAAATGCCTACTCGCCNNGGA
ANNNNAAAGTACCTTTTACTGCATGNGNNNNAGNNNGAGNNTGANGNTTT
AGNCGAGNATATTTTACTCCCAGGTAAAAGAAATTTTTTGGNTCTGCCAA
GTTTGATATACACATCCTCCTTGAGCTGTAGGATTTGGTTTGTGTTGTGT
TGTTTGTGTTGTTTCTGCACAGTCTCACAGTGTGATCCATTTTTTTTTCA
GACANGNAGCAANCCNCCTGCTTATCTCCGAGCATTCTGGGATTGCTGAC
ANAAACGATTTCACTCGTTTCAAAGCGACNAANCGANACAGANACGAAAG
GACCACAGGNGCACCCCCCCCGCCCCACAACGACACCACCGGGCAACCGA
GAAACCCAACGGGGCACCGAGGGCACGAAACACCAGCAGGGAGAAGAGCA
AGGCCCGAGAAACAGCGAGGACAAAAGCANGAAAGCGCAACAGCCAAACA
AAACAGAGAACCCAAGCCAACACCGAAGCAACACAGAACCAAAAACAGAA
AAACAACAAAAAAAGACCGAAAGGCAGGCAAAAAGAACAAAAACAAAAGA
AAAAACGAAAAGAAGAAAACCAAGAACGCCCCCCACAACCACCTTTTTTT
TTTTTTTTTTCCCACAGAAACCCAAAGAGATATAATATTTTATTTATGTA
ATAAGTAATATAATATTAATAACAAATTACTTTAAAACGACTATATAATT
TCTCACCN
ACGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACCAGAAGAATTCACTATGTAGCTAAGCCTGACCTGG
AACTGATAGGAATCCTCCTGTATCGGGCTCCTAAATGCCGTGCCATCATG
TTTAGTTACTTTTAGGGCTTTTTAAAAATAAAAGGCTTACATTCATTTGT
TTGTTAGGTTGTTTGCGTATCTGTGTGATTGATCTTAGATATCTATCTAT
CTATCTGTAAGTCTATGTGTGGATGGATGTGCACACACCGTGGTGTATGG
AGAAGGTCAGAGGACTTCCTCCTTGGAGAGGGTTCTCTTCTGCCATGTCT
GTCCCTGGGGTGGAACTAAAGTTCTCAGACTTTACTCTGAGGAGCCCTTC
TCACCATCTCCAGGGTCCAACACTAGATCTTTTTTATTTAGATTCTCTTT
TTAAGTTTCTTGTCTCTTATGATTTATTTATTTTATGTATATGAGGACAC
TACTGGGGTCCTCAGACACATCAGAAGATGGCATTGTATCTCTTTTATAG
ATGTTTGTGAGTCAACATCGTGCCTGCTGCCAATTGAATTTCCGAACTCT
GCAATAACAGTCAGTGCCCTTATTCCCCGAGCTATCTCTCCTAGTCCCTT
TCTCTATTATTTTTATCCTGTCTTCTCATCTGCAACTTTCTTCCCTCCTG
CATAATTTTTCTAAAGATACTTCTATCTTTTATTAATGTGTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_k09.g1 MSMg01no406_k09.g1 CHROMAT_FILE:
MSMg01no406_k09.g1 PHD_FILE: MSMg01no406_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:02 2005
         (239 letters)



>mm_chr1_137384352_137384990
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactatgtagctaagcctgacctggaactgataggaatcctcctgtatcgggctcctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactatgtagctaagcctgacctggaactgataggaatcctcctgtatcgggctcctaaa 260

                                                                       
Query: 61  tgccgtgccatcatgtttagttacttttagggctttttaaaaataaaaggcttacattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccgtgccatcatgtttagttacttttagggctttttaaaaataaaaggcttacattca 320

                                                                       
Query: 121 tttgtttgttaggttgtttgcgtatctgtgtgattgatcttagatatctatctatctatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtttgttaggttgtttgcgtatctgtgtgattgatcttagatatctatctatctatc 380

                                                                      
Query: 181 tgtaagtctatgtgtggatggatgtgcacacaccgtggtgtatggagaaggtcagagga 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaagtctatgtgtggatggatgtgcacacaccgtggtgtatggagaaggtcagagga 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)