BAC Information

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BAC

Clone NameMSMg01-406L12
Chromosome1 (Build37)
Map Location 181,974,169 - 181,974,410
singlet/doubletsinglet
Overlap geneCdc42bpa
Upstream geneSmyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190
Downstream geneCabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a, Ephx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406L12.T7 (MSMg01no406_l12.b1)MSMg01-406L12.TJ (MSMg01no406_l12.g1)
ACCAG504847AG504848
length756762
length of high quality
(start - end)
474 (74 - 547)242 (73 - 314)
definitionCHROMAT_FILE: MSMg01no406_l12.b1 PHD_FILE: MSMg01no406_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:08 2005CHROMAT_FILE: MSMg01no406_l12.g1 PHD_FILE: MSMg01no406_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAAACGACCGCGGAA
NCANGAATTTCTNAAAAAATCGGAAGAACTAAAAAATATCATCCTGAATG
AGATAACTCAATCTCACAAAAAAAAAAAAAACACACATGGTATACACTCA
CTGATAAGTGGATATTAGCCCAAAAGCTCCAAATAACCAAGATACAATTC
ACAGACCACATGAAGCTCAAGAAGAAGGAAGATCAAAGTGTGATTACTTC
AGTCCTTCTTAGAAGGAGAACAAAATACTCACAGGAGCAAATATGGAGAT
AAAATGTATTCATAAATTGAAGGAAAGGCCATCCAGAGACTGTCCCACCT
GGGGTCCATCCAATATACAGTCACCAAACCCAGACACTATTGTGGATGCC
AAGAAGTGCATACTGAAAGGAGCCTGATATGGCTGTCTCCTGAGAGGCTC
TGCCAGAGCCTTACAAATATAGAGGCAAATGCTTGTAGCCAACCATTGGA
CTGAACACGCTCGGGGTCCCCAATACAGGAGTTAGAAAAAGGACTGAAGG
AGCTGAAGGGGTTTGCAACCCCAGAGGAAGAACAATAATATCAACCAATC
AGGCCCCTAAATGCTCCCAGGGACTAAGCCATCAATAATGTATTACACAT
GGCTCCAGCTGCATAAGTTTGCACAGGATGGCCCTTGGCATGCCACAATG
GGGAGGAGAGGACCTTGGCCCCTATTAAAGTTCCAAAGATGCTCCCCCTG
AAACGN
AATGATAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGTAATAACATGCTCTAAATCTCTTT
AGCATTTCTACGTGCCCTATTTATACCTGCAAGTCTGTCTTGCTCACATT
TTATCTGTGGATACCATAAATATTTAATGCATTTTTGGGCACAAAGTTTT
GTATGCAAAGTTTAATAATAACTTTATTTTTTATTTTGCTTTCCCATCTA
AGCCACTTGTTCTCCCACTCCTCAGTTTTACTTTATTTGAAAGTCAGTAA
TTATATTGGAATTATTGGTCCTCACCATCCATTATGCTACAGTTGCTCTA
TGGGGTATAAAATCATCCTTGAGTACCTCAGCTAACTTTTGCTTTAAATG
AACACAAGTGTTTAGGAATGTAATAGTGGAAATAGTGTTTACAGACTGAC
AATTTTACTATTTACTGTTCACTTTTTCCTTCCTGAAATCCCAAATTTCT
TTCTGTTACCATTTTCTCAAATTCTGAAGTATGTTGTTGACAATTTCTTG
CAACGAAAGATCACGGTTAATGAATTCCTTGGAATTTTTGTCATTGTAAT
ATATCTAAAGCTTTATCACAGAAATGCCTATTTGATTATGAAAATCTTAT
TTTATTTTTTCTTGGTGGCATCCATCCAAAAACTAATGTATTTGTTTCTC
AACCCCTGGTGTATCTAATAATTTCAGCAAATCATTTTTTCTTGCTTTCC
CACATCATGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_l12.g1 MSMg01no406_l12.g1 CHROMAT_FILE:
MSMg01no406_l12.g1 PHD_FILE: MSMg01no406_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:08 2005
         (242 letters)



>mm_chr1_181973969_181974610
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtaataacatgctctaaatctctttagcatttctacgtgccctatttatacctgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actgtaataacatgctctaaatctctttagcatttctacgtgccctatttatacctgcaa 383

                                                                       
Query: 61  gtctgtcttgctcacattttatctgtggataccataaatatttaatgcatttttgggcac 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtctgtcttgctcacattatatctgtggataccataaatatttaatgcatttttgggcac 323

                                                                       
Query: 121 aaagttttgtatgcaaagtttaataataactttattttttattttgctttcccatctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaagttttgtatgcaaagtttaataataactttattttttattttgctttcccatctaag 263

                                                                       
Query: 181 ccacttgttctcccactcctcagttttactttatttgaaagtcagtaattatattggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ccacttgttctcccactcctcagttttactttatttgaaagtcagtaattatattggaat 203

             
Query: 241 ta 242
           ||
Sbjct: 202 ta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)