Query= MSMg01no406_l19.b1 MSMg01no406_l19.b1 CHROMAT_FILE:
MSMg01no406_l19.b1 PHD_FILE: MSMg01no406_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:09 2005
(242 letters)
>mm_chr1_178973446_178974083
Length = 638
Score = 426 bits (220), Expect = e-124
Identities = 235/242 (97%), Gaps = 5/242 (2%)
Strand = Plus / Plus
Query: 1 cagagaaattctgtctcgaaaaaccaaaaaaaaaaaaaaaaagagtgaggaaacataatt 60
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 cagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaa----gagtgaggaaacataatt 256
Query: 61 ggtagcaatcattctatgggaaataatattttacaagtaatagagataaatagaatcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggtagcaatcattctatgggaaataatattttacaagtaatagagataaatagaatcata 316
Query: 121 gatttgtttgttaaataacaaaatttttttctttaatttttttaaacataacttcaattc 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 317 gatttgtttgttaaataacaaaatttttt-ctttaatttttttaaacataacttcaattc 375
Query: 181 caaagcaaaacagaaaatatcgtcgtatcattcaagtttactgaggtaaatttctaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caaagcaaaacagaaaatatcgtcgtatcattcaagtttactgaggtaaatttctaaggt 435
Query: 241 gt 242
||
Sbjct: 436 gt 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 638
Length adjustment: 9
Effective length of query: 233
Effective length of database: 629
Effective search space: 146557
Effective search space used: 146557
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_l19.g1 MSMg01no406_l19.g1 CHROMAT_FILE:
MSMg01no406_l19.g1 PHD_FILE: MSMg01no406_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:09 2005
(131 letters)
>mm_chr1_179152320_179152850
Length = 531
Score = 253 bits (131), Expect = 2e-72
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 1 ttcctgctctggaggtgttgatacccaagatttgtacattttggaatttaaaattgagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttcctgctctggaggtgttgatacccaagatttgtacattttggaatttaaaattgagac 272
Query: 61 tatataggaagagatcatataaattttcaggagattaaagcatatctttgttcttgaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tatataggaagagatcatataaattttcaggagattaaagcatatctttgttcttgaata 212
Query: 121 tccctttgtga 131
|||||||||||
Sbjct: 211 tccctttgtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space: 64329
Effective search space used: 64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
