Query= MSMg01no406_l24.b1 MSMg01no406_l24.b1 CHROMAT_FILE:
MSMg01no406_l24.b1 PHD_FILE: MSMg01no406_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:10 2005
(483 letters)
>mm_chr1_82454071_82454953
Length = 883
Score = 833 bits (431), Expect = 0.0
Identities = 481/525 (91%), Gaps = 42/525 (8%)
Strand = Plus / Minus
Query: 1 gaagggtggtacacagcagccagtgatcagtttattcaaggaaggagtttaacaagtagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaagggtggtacacagcagccagtgatcagtttattcaaggaaggagtttaacaagtagc 466
Query: 61 atctagaaacatggagagggcaaattagtcagctaaatgggtctaatggtataaacggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atctagaaacatggagagggcaaattagtcagctaaatgggtctaatggtataaacggcc 406
Query: 121 agacatgggtgctgccatgaccccatagaaacttcagttaaggaacaaaaggaagaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agacatgggtgctgccatgaccccatagaaacttcagttaaggaacaaaaggaagaaaaa 346
Query: 181 ggatgccaagcagttaaaatactctgcaggactagtgaggctgtgccaagatccataagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggatgccaagcagttaaaatactctgcaggactagtgaggctgtgccaagatccataagg 286
Query: 241 atgtatctgagccttgtcaagggtgggggcagggggctgatggat--------------- 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atgtatctgagccttgtcaagggtgggggcagggggctgatggataccacctctgtcctt 226
Query: 286 ---------------------------accacctctgtccttgctgccagccaggttagt 318
|||||||||||||||||||||||||||||||||
Sbjct: 225 gctgccagccaggttagtccatgtgacaccacctctgtccttgctgccagccaggttagt 166
Query: 319 ccatgtgtgctctccatgcctgctgaagtttctctctcagagtaagtgtagtctgggcca 378
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 165 ccatgtgtgctctccatgcctgttgaagtttctctctcggagtaagtgtagtctgggcca 106
Query: 379 tatgtggctgctatgaagactcagttgataacttttatgaaggggttggttagcttgaaa 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tatgtggctgctatgaagactcagttgataacttttatgaaggggttggttagcttgaaa 46
Query: 439 tgagtacatcataaacccttgataacaatccattcttggaaacca 483
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 tgagtacatcataaacccttgataacaatccattcttggaaacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_l24.g1 MSMg01no406_l24.g1 CHROMAT_FILE:
MSMg01no406_l24.g1 PHD_FILE: MSMg01no406_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:10 2005
(504 letters)
>mm_chr1_82294205_82295108
Length = 904
Score = 913 bits (472), Expect = 0.0
Identities = 496/504 (98%)
Strand = Plus / Plus
Query: 1 agacagctctgcgtggggataactgttttctgtttcatgaaatctagaagtctgagctga 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 agacagctctgcgtggggataactgttttctgcttcatgaaatctagaagtctgagctga 260
Query: 61 gcgagttcaaatgacttgcttgaatggctgaagtccgggaccttttaaaagttcttcata 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgagttcaaatgacttgtttgaatggctgaagtccgggaccttttaaaagttcttcata 320
Query: 121 catatgtctgctacctgggcttgggtgactaagatgactcaagctgagtactttcattgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatgtctgctacctgggcttgggtgactaagatgactcaagctgagtactttcattgg 380
Query: 181 agatgtctcaggcccttcacagtataggaactggatcctcaaggaggtatctcaaatgga 240
||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct: 381 agatgtctcagacccttcacagtatagaaactggatcctcaaggaggtatcccaaaggga 440
Query: 241 gcttttagaaagtggattttgcaatagaaccaagcagaagttgtgccacttttaggagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttttagaaagtggattttgcaatagaaccaagcagaagttgtgccacttttaggagac 500
Query: 301 cactcacaggtcacagggcttcatagccactgcacacatgcaccctattagttcaaaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactcacaggtcacagggcttcatagccactgcacacatgcaccctattagttcaaaaga 560
Query: 361 atcagtcccaggcagagtaaagcgaaaggagcctaggtcatagttttgatgggacaagtg 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcagtcccaggcatagtaaagcgaaaggagcctaggtcatagttttgatgggacaagtg 620
Query: 421 ttaaacaatttgtagccactttctgaagctattacagattgaaaggttgctggacagtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 ttaaacaatttgtagccactttctgaagctattacagattgaaaggttgctgggcagtgg 680
Query: 481 tggcacacgcctttaatcccagca 504
||||||||||||||||||||||||
Sbjct: 681 tggcacacgcctttaatcccagca 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
