BAC Information

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BAC

Clone NameMSMg01-406M04
Chromosome1 (Build37)
Map Location 43,147,271 - 43,147,828
singlet/doubletsinglet
Overlap geneTgfbrap1
Upstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588
Downstream geneAI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406M04.T7 (MSMg01no406_m04.b1)MSMg01-406M04.TJ (MSMg01no406_m04.g1)
ACCAG504879AG504880
length743709
length of high quality
(start - end)
608 (46 - 653)---
definitionCHROMAT_FILE: MSMg01no406_m04.b1 PHD_FILE: MSMg01no406_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:11 2005CHROMAT_FILE: MSMg01no406_m04.g1 PHD_FILE: MSMg01no406_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAGTTCATTGACCTGAGCCACCGTTGACCCCATGGAGGTCTTAC
TGTGGAGTTAGGCTGTGGATTCTGGATTTCAGTTCACTGTGCATGGCAAG
GTGTGCATGTTCAGCTCATCGGTAAAACTCGGCACAACTCCTGGCCTTGT
TTTCTCTGCTCTCCTTCCTCCTGTCATATCTGAGTTGAAGTCTTCTGGCC
CTAAAGTTGGGGACAGAGCTTTTGCAGCCTGCCCGGCCAATTCAGCTTTG
GCCTAAACTGTCTAGAGACAAAGGTTGGTACTGTGCTCCACCGGCAGCTT
CTTCTAGTTGTAGAACTGTAAAAGGCCTGGAGCTTGCTGTTTAAAGAGCA
ACAGGGGCCATGGGAATGTAGCTCAGTGGGCAGATTGCCAGCCTAGCATG
ACTGAAGACATCAGGTGTATCTCCAGTCTGCATAAAGCCAGGTGTAGAGG
CTATAATTCCTCCACTTGGGAAGAGAAGCAAAGGGATGTGAAATTCAAGG
TCTTCTTTAGCTACATAGCAAGTTAGAAGGGAGCCTGGGCTACATGAGAC
GCTGGTTGGTTTTTGTTTGTTTGTTTGTTTTCTTAATCTTGCCCAAGAGA
GTATGTGCCCAGCACAAGTGCACATGAAAGGTTTTCGAAACAATACATGT
ATTTTCTAGATCTTGATTGCAATTTAAATTTCCGCGTTTTTTT
CAAAAAAAAAAAAACCAAANCCCCCCCATACGCACCAGCCCCCCCCCCCC
ATTACCAAAAAGGGGGCNNNNCCCCCCGCCCACAAAAAACAAAACAAATT
TTCCCCCAACAAAAAACAAAAAAAAAACACACCCCACAACGCGCGCGCAA
CCCCCCCGCCAAAGCCACCACAAACCGAGAAAAAAAGAAACAACAAATAC
CAACGAAACCCACTTTTATAATCAAGAATATGACTGGAACATCCAAGTCA
ACCCCCTCCCCCTCACCCAATTTTTTTTTCACAAAAAAACACCATCCCAT
ACACACACACTTAAACATTCTCCAACGAAACAACAAAAAAAAACACAAAA
CCACTCACCAATTATAAAACAAATACAAACAAACAAACATAAAAAAAAAA
AAAAAACAACAAAAAAAAAATACTTCCCCCCCCCCATACAAACAAAACCC
CCAAACACAAAAATACCACCACCCAACTATATCTACCTACAAAAACAATA
TAAAACCTAACACCACCACATTACAACACCACAACAAATAAACCTACTAC
AAACAACACCCCCAACCCAACAATCATCCAAACAAAACCCAAAACTAACA
AACCAACAATTATCCACCCCATGCCTAAAACCCCCCCCACCCCCAATTCC
CCTATACACCATACCCCCCCCCCCCCAACCCAACACCCATAAACCCACCT
CCCCACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_m04.b1 MSMg01no406_m04.b1 CHROMAT_FILE:
MSMg01no406_m04.b1 PHD_FILE: MSMg01no406_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:11 2005
         (608 letters)



>mm_chr1_43147271_43148278
          Length = 1008

 Score = 1002 bits (518), Expect = 0.0
 Identities = 548/558 (98%), Gaps = 1/558 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcatagttcattgacctgagccaccgttgaccccatggaggtcttactgtggagtta 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aattcatagttcagtgacctgagccaccgttgaccccatggaggtcttactgtggagtta 499

                                                                       
Query: 66  ggctgtggattctggatttcagttcactgtgcatggcaaggtgtgcatgttcagctcatc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggctgtggattctggatttcagttcactgtgcatggcaaggtgtgcatgttcagctcatc 439

                                                                       
Query: 126 ggtaaaactcggcacaactcctggccttgttttctctgctctccttcctcctgtcatatc 185
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 438 ggtaagactcggcacaactcctggccttattttctctgctctccttcctcctgtcatatc 379

                                                                       
Query: 186 tgagttgaagtcttctggccctaaagttggggacagagcttttgcagcctgcccggccaa 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 378 tgagttgaagtcttctggccctaaagttggggacagagcttttgcagcctgcacggccaa 319

                                                                       
Query: 246 ttcagctttggcctaaactgtctagagacaaaggttggtactgtgctccaccggcagctt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 318 ttcagctttggcctaaactgtctagagacaaaggttggtactgtgctccactggcagctt 259

                                                                       
Query: 306 cttctagttgtagaactgtaaaaggcctggagcttgctgtttaaagagcaacagggg-cc 364
           ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct: 258 cttctagctgtagaactgtaaaaggcctggagcttgctctttaaaaagcaacagggggcc 199

                                                                       
Query: 365 atgggaatgtagctcagtgggcagattgccagcctagcatgactgaagacatcaggtgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 atgggaatgtagctcagtgggcagattgccagcctagcatgactgaagacatcaggtgta 139

                                                                       
Query: 425 tctccagtctgcataaagccaggtgtagaggctataattcctccacttgggaagagaagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tctccagtctgcataaagccaggtgtagaggctataattcctccacttgggaagagaagc 79

                                                                       
Query: 485 aaagggatgtgaaattcaaggtcttctttagctacatagcaagttagaagggagcctggg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  aaagggatgtgaaattcaaggtcttctttagctacatagcaagttagaagggagcctggg 19

                             
Query: 545 ctacatgagacgctggtt 562
           ||||||||||| ||||||
Sbjct: 18  ctacatgagaccctggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)