BAC Information

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BAC

Clone NameMSMg01-406N08
Chromosome1 (Build37)
Map Location 91,453,755 - 91,453,972
singlet/doubletsinglet
Overlap geneCentg2
Upstream geneArl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406N08.T7 (MSMg01no406_n08.b1)MSMg01-406N08.TJ (MSMg01no406_n08.g1)
ACCAG504935AG504936
length728724
length of high quality
(start - end)
230 (92 - 321)219 (130 - 348)
definitionCHROMAT_FILE: MSMg01no406_n08.b1 PHD_FILE: MSMg01no406_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:17 2005CHROMAT_FILE: MSMg01no406_n08.g1 PHD_FILE: MSMg01no406_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAACATCAAAAATTTTGCGGCGCTAAANGAANCACAATTTCGTACCC
ATCCGNGNNAANNCNTCNATTATCTTTATCAGAAGNNAAGNCCTGAAGAC
TTAAGGACAGGCAAAGCGGCACTTAGTCCCACCCATCCACCCACATGCAT
GCATCCAACCATCCATCCCCCTCCCCACCGCCACCTGCTCCCTCAGCCCT
CCATCCCCCCACTACCTGCTCACCTGCACCTACCTGTCCTATGTCCTACC
AGCATTTTTTTTCCTTCCCCGCTTACCTGTCCTCTACCCAACTGTCCATC
CCATGAACCCACCTCTCATCTTTTCTATTCCATCCACTCNANACAGNCAT
CCACCCAACCAGGATGTCACCCTCATGGCAGCAGAGAGCTGGTGTGGAAC
TATGATATCAGAAGGACAAGGAATAAAAAGATGAGACTCCCGGAGAGAGA
AAAAGCCAACACAAGAATGGCATTCTTCTGTGGAGAGACAGCAAGCTGTA
CAGAACTTACAGCAGGGTGCTGTTACCCTGAGGAAACCACGCATAAATGG
GGCCTGTAACTGCCTTCCGACATGTTCATGTTACAACAGGCTTGTTATGC
CTCACACATTTATTCTGGCCCCTGCGCCATGACCTGCACACCAAGGAACG
TATCTTTTTTTTTGGCTCAACGCCCCACTGCTATGTCTTTCACAAATCAC
ACAAAGCTTCCAGAAAATCCCTGGCCCG
TTTTTTCGATGCTAGTGNNGAGCCTGGNGGNCGCCTGGTTCGNGACTGGA
GGNGAACNANAGAATGTCTACACAAGACCNGNNNNNAGNGNGNCANGAGN
GNGNNTTAGGGACGCATGTTGTTAGAAAATGAATGTCTCCACCCACCCCA
CCCCCCTTTTTGGGTAGAATGCCTTCCTAGCATTCCTGGGAATAACTCAA
GCTGCACTTTGGTAAATGTCAAAAAGTTGGAAGTTCAGGGCAGTGTATGT
TTTTCTGTCTGTGTCTGCCAGCTGTTTTCCTGGCCCCGGGCTTCTGTCTT
TCTCTAAAACTTTACTTTTTTTTTTTAGAACNNACAGGGACAGCACCCCC
CCAGCNGGGGGGGAGGGCAAGCACACTTTCCCAGAGACACCCAATAGCCG
GGCGCCACCGGGANCCNGAGCTGACTCCAGTCTAATTTCCAGGAGCTTAC
CTTACGTGTTATTCTCTCCCTGCCGGCTTTATTTTTCCCCCCGAGGATCA
ACAGCATGCGTCTTTCGGAAATTGCTGCTTCATGATTACTGCCCTGCCCG
TCCCGCCTTAGTTTATCTGACCCTTGCAACACGTGTCCTGCCTTTTTTCT
GTTTTTTATGCTCTTACTTTCTGCCACGCACCGCCGCAAACTCTTTTTTT
CTTTTTTTCTCCCTCCCCCCCACCCGTCGTTTCTTTTTCCCCATCCCCTT
ATCACTCCTTTTTTACTTTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_n08.g1 MSMg01no406_n08.g1 CHROMAT_FILE:
MSMg01no406_n08.g1 PHD_FILE: MSMg01no406_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:17 2005
         (219 letters)



>mm_chr1_91453555_91454173
          Length = 619

 Score =  340 bits (176), Expect = 3e-98
 Identities = 207/222 (93%), Gaps = 8/222 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaatgtctccacccaccccacccccctttttgggtagaatgccttcctagcattcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaatgtctccacccaccccacccccctttttgggtagaatgccttcctagcattcctgg 260

                                                                       
Query: 61  gaataactcaagctgcactttggtaaatgtcaaaaagttggaagttcagggcagtgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaataactcaagctgcactttggtaaatgtcaaaaagttggaagttcagggcagtgtatg 320

                                                                       
Query: 121 tttttc----tgtctgtgtctgccagctgttttcctggccccgggcttctgtctttctct 176
           |    |    ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 t----cggcctgtctgtgtctgccagctgttttcctggccccgggcttctgtctttctct 376

                                                     
Query: 177 aaaactttactttttttttttagaacnnacagggacagcacc 218
           ||||||||||||| | |||  || ||  ||||||||||||||
Sbjct: 377 aaaactttactttgtctttggagtacttacagggacagcacc 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)