Query= MSMg01no406_n24.b1 MSMg01no406_n24.b1 CHROMAT_FILE:
MSMg01no406_n24.b1 PHD_FILE: MSMg01no406_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:20 2005
(447 letters)
>mm_chr1_82837141_82837987
Length = 847
Score = 810 bits (419), Expect = 0.0
Identities = 437/447 (97%), Gaps = 8/447 (1%)
Strand = Plus / Plus
Query: 1 tgatctggtagttaatattccttgggtcttaaaaaatattaccgtgcatgtcgcagtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatctggtagttaatattccttgggtcttaaaaaatattaccgtgcatgtcgcagtgtg 260
Query: 61 gggacacgtgtgcatgttttgtatacctgggttcacttttacaggctgaaccttttcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggacacgtgtgcatgttttgtatacctgggttcacttttacaggctgaaccttttcctg 320
Query: 121 ggccctcccaaaattttttattatattaatagcaatgtacataacacgtaggaaattttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccctcccaaaattttttattatattaatagcaatgtacataacacgtaggaaattttg 380
Query: 181 taaaaagttgaaggatgttgacatggccaataattcactattcccccagacacccttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaagttgaaggatgttgacatggccaataattcactattcccccagacacccttcca 440
Query: 241 ttttaaatttgtttt----aggaggcatctttggttcttcatgagtataacattattttg 296
|||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgaatttg----ggcaaggaggcatctttggttcttcatgagtataacattattttg 496
Query: 297 ggtggttcctattcggtttttggatgagctttagttagggtgtggtgataaataaatgcc 356
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggtggttcctattcagtttttggatgagctttagttagggtgtggtgataaataaatgcc 556
Query: 357 ttgtctcagcatttacattctaatggagacagtggatatacgtaagaaagaccagtgtct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttgtctcagcatttacattctaatggagacagtggatatacgtaagaaagaccagtgtct 616
Query: 417 gggttctgtgttcagctttggagtagt 443
|||||||||||||||||||||||||||
Sbjct: 617 gggttctgtgttcagctttggagtagt 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_n24.g1 MSMg01no406_n24.g1 CHROMAT_FILE:
MSMg01no406_n24.g1 PHD_FILE: MSMg01no406_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:20 2005
(547 letters)
>mm_chr1_82990274_82991220
Length = 947
Score = 710 bits (367), Expect = 0.0
Identities = 373/375 (99%)
Strand = Plus / Minus
Query: 1 tctccattttttggttaagacttaggacagcctttgaaacatctaactgtattacctagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tctccattttttggttaagacttaggacagcctttgaaacatctaactgtattacctagg 316
Query: 61 caagctagggcacagctggcaaaaataatttgttttccaatttctccccagcctcctgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caagctagggcacagctggcaaaaataatttgttttccaatttctccccagcctcctgag 256
Query: 121 ctgtgcttggtatttccaatgcagccttagctagttaaaactctgtaacgatgactttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgtgcttggtatttccaatgcagccttagctagttaaaactctgtaacgatgactttta 196
Query: 181 acctctgagtcgtgacctctttggaggtcagcctttcacaggggtcacatgagaccatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 acctctgagtcgtgacctctttggaggtcagcctttcacaggggtcacatgagaccatca 136
Query: 241 gaagacacatatatttacattacgattcataacagtagcaaaatttgagctatgaaatag 300
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 135 gaaaacacatatatttacattatgattcataacagtagcaaaatttgagctatgaaatag 76
Query: 301 caacaaaaagtaattttatagtttggtggtcaccacacatgaagaactgagttaaagagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 caacaaaaagtaattttatagtttggtggtcaccacacatgaagaactgagttaaagagt 16
Query: 361 tacagcattaggaag 375
|||||||||||||||
Sbjct: 15 tacagcattaggaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
