BAC Information

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BAC

Clone NameMSMg01-406O06
Chromosome1 (Build37)
Map Location 78,665,373 - 78,665,473
singlet/doubletsinglet
Overlap geneAcsl3
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Utp14b
Downstream geneLOC620521, Kcne4, LOC100039260, EG545332, Scg2, Ap1s3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406O06.T7 (MSMg01no406_o06.b1)MSMg01-406O06.TJ (MSMg01no406_o06.g1)
ACCAG504979AG504980
length843791
length of high quality
(start - end)
101 (74 - 174)127 (71 - 197)
definitionCHROMAT_FILE: MSMg01no406_o06.b1 PHD_FILE: MSMg01no406_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:21 2005CHROMAT_FILE: MSMg01no406_o06.g1 PHD_FILE: MSMg01no406_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTTGTGGTCGCTAAACGACNCACTAAATGCAGCAGAGGCGCGGAAN
NCCNNNAAGTCACCACTACGCGCACCAAAAGCGCCTCACTAAAATGACCC
CAACTAAACAAGACTAAATACAAAAAAGTTTGATGTGTGGATCCCTACAA
CAATTCCTATCAATAGAAAATTCAACATTTTATAAATGAACAGTTAAAAT
GGCCTCTAAGCACCTCAAAGTCCTTCATGTATTGATCTGCTCTCTCTGAC
CTATACTCTATATATGACCCCTCACTCTATGGGTGGTTTGCTCCCAAGGA
TTCACAGATGGTTTTTTTTTTAATCACATTCTCTGATAAAAGGCTTGAGC
ACCAATTATTACACAACACAATTCTTCTGATCCCACATTTAAGAATTCAA
CTTTACTTACTTTCTTGTTCCACCATTCATTTCTTCACTCTTAATTCAAT
ATCCCCTCCTCCTCCTGATCTGTTATTTTTTCACATATCCTTTCCTGCCC
TTTTAATTCTCCACCCTATCCCTACAAGTTCCCCTTGTCTAGTACCTATA
TCATGCCATTTTACTGCCTCATATAACCTTTTTTATCCTCCTTTCCCTCC
CCCCCTACCCAAATACATTATTTGCTCTTTTTCATTATTTCCCTCTCTCT
TCCTTCTACCCTCCCCTCTCCTTTACTATCATTCTCCCCTTCTGTTATAT
ACTTTTTCTTTTTCTTTCATTATGTTACATGTCCCATATTATTCTTCCTA
CCTTCTTTTATATTTCCCTCCTGTTTTATTAACTCCTTACGCTTTTTCAT
ATCCACGAGTTTCATCTTTATCTACAGCCTCTACATATCTTCG
TCGATGCAGTGGGAAGCCCGGAGGCCGACTGTTTCAGAATGGAGGNGAAC
TATAGAAGTTTCGCGGAAGTCTTTCTCTCTCCTTGGTGATGAACAGGGTT
TGTAGGAGCTGTTGGCAATCATCCCAGGTGGGCTGGTATGAGTACATCAG
AGACTCTATCAACCCAGTAAGCCCTGTAGGATTTTCTGAGAAAGAGGGGC
GGTTTACTTTCCAGTTATAGAGATCAGAGGAAGAAAAAGGTCAGTATTGC
AGATGCTGTTGAGAGCTTCTACAGCCCTAAGTGGATGCGCCATCGCAGAA
TCGGCTGGCCCCTTTTTTTTTACTCCCCACCGGCTTCTTGCTCCTGCTGA
GGGATCTCTCTCCCCGATGTCTATCACCGTTTGTGGACCTGCTCAATCTG
AGGGTTTGTTGCACCGTTTGTACAACTGTGGCATCTATCCGCTCTTATTT
CCTCCTTTTTTTCTTCTCTTCTTCTCCCTTCCCTCTTTCCTTTTCCATTC
CCCCTTTTCCTTTTTTTTATTCCTCTTTCCTTTATTTTTCTTTTCTTTTC
CTCTTTTTTTTTTCCTCTCCTCCCCCTTCCTATTCTTTTTCTTCTTCTTT
TCAGTATCTCTATATTCTTATATCTCCCCTTCCCCATTTTTTCCTCCTTT
TTCTCTTCCCTCTTCCTTTCCTTCTTTTCCTCTTTTTCTTTTACTCTTCC
CCTTTTCCCCCCCCTTCCTCCGTTGCGCTTGTTCTTCTTTTCTCGCTCCC
CCTCCTCCCCTTTTCCTTTTCTTTTCCTCTCCCCCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_o06.b1 MSMg01no406_o06.b1 CHROMAT_FILE:
MSMg01no406_o06.b1 PHD_FILE: MSMg01no406_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:21 2005
         (101 letters)



>mm_chr1_78665173_78665673
          Length = 501

 Score =  165 bits (85), Expect = 9e-46
 Identities = 97/101 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaaaagcgcctcactaaaatgaccccaactaaacaagactaaatacaaaaaagtttga 60
           |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 301 accaaaagtgcctcactaaaatgacccaaactaaacaagacgaaatacaaaaaagtttga 242

                                                    
Query: 61  tgtgtggatccctacaacaattcctatcaatagaaaattca 101
           |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 241 tgtgtggatccctagaacaattcctatcaatagaaaattca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 501
Length adjustment: 8
Effective length of query: 93
Effective length of database: 493
Effective search space:    45849
Effective search space used:    45849
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)