BAC Information

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BAC

Clone NameMSMg01-406O08
Chromosome1 (Build37)
Map Location 56,031,180 - 56,031,540
singlet/doubletsinglet
Overlap genenone
Upstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406O08.T7 (MSMg01no406_o08.b1)MSMg01-406O08.TJ (MSMg01no406_o08.g1)
ACCAG504983AG504984
length843771
length of high quality
(start - end)
84 (71 - 154)369 (71 - 439)
definitionCHROMAT_FILE: MSMg01no406_o08.b1 PHD_FILE: MSMg01no406_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:22 2005CHROMAT_FILE: MSMg01no406_o08.g1 PHD_FILE: MSMg01no406_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TCTTTGTTCTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAAATTTGGAGTTTCATTATT
GCCCATTTGTCATTTATCGATCCTTATGATGCCGCCATTGCTGTTCTGTT
CAGGAACTTTTCTCTTTTTTTCATATCTTCAAGGTTTTTCCCTACTTTCT
CCCTCTTTAAGCTTCACTGCCTTTTGTTTTTATGTGATGTTTCTTTGACC
CATTTTCTATTTGTACCTTTATTACTTGGTTGTTTACCACGTCTTCGTTT
TCTCTCTCCTATCTACTTGAATTACCTTTTATTTTGCGGTTTTCTTTTAT
TTGATTGACAAATGCTGTCTTATTCATTCTATTTCTCTGTTCTCTTTACT
TTCTCTTTCTTTTTTTTTCCTCTTTCTCCCTTTTTTATTTTGTTTTCTTC
CACTATTTTGTCCGCATTTTCCACTTTTATCCCTTTTTTCTACTCTACCC
CCCTCTCTCTTTCTTCCCTTCTTTCTTCTATTCTTTTTTCCTTTATTTCC
TCCCTATTGCTGTATTTTTTTATCCTTATTTTTTACTCTCTTCATCTTCT
TGCTTATTTCTTTTTCTTTACTCTCTTTCATTTCCTCCCTTATTTCTTTA
TTTTCTCTGTATTTTTTCTTACTAATTCTTCCTCCCTTTCTCT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGCGACATAACACTTATCTGAGCATTTCCAACCAAAACCCAAA
CAAGAGCTTATGTCATGGGCTCAGCCAGCTGTCCTTTCCTGTCCTGTCAC
GTTTGCTTATTATGAGGATCTCCAACGTTTCATCTTCTGTACACAAAGAC
AAAGTGCTAAGTACCTTATATGATAAAGGCTTAAGCACAGTTTTATATGT
TGGGGTTAATTGCTGAACCATTCTTTAATTTGGGCAGAATCCTTTTAAGT
GTTAAAGTCTCTTTATTTTTTTCCCTGGCGGGCTAATGAATAGACCAGCC
TAGTTCCTATGAGGAATTTGGTTTCCTAATGAATATAATTAGCATAACAA
AAGGAGTGGAAAAGCAAGTTTATTACTTTCAAATCTTAGACCTCAGGTGA
ATATTGTCTACATTTACTTTATGTCATGTCTTTGTCTTCTAAACCCCTTT
GGTTAGCTACATCAAGTCTTATCGTATACTGTATACATTTGCACATATAT
TGTTACAGCTCCTCTGGGCATCTTTCTTTATAGGTAGAGTCATGTACACC
ATAATTTTTTTGCCTAACATCATCACCAGCTTATAATTTCCAACTATCTA
TTTTTTCCAATACCGCGACCCAATGAGCTCTACCTTCCCTGCGCCAGCTT
ACACATTTCCACATTTATGCCAACCACCGCCCCCACTTTTCTTCCTTTAT
TAACCTCCACATCCATCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_o08.g1 MSMg01no406_o08.g1 CHROMAT_FILE:
MSMg01no406_o08.g1 PHD_FILE: MSMg01no406_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:22 2005
         (369 letters)



>mm_chr1_56031120_56031890
          Length = 771

 Score =  578 bits (299), Expect = e-169
 Identities = 349/371 (94%), Gaps = 12/371 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatctgagcatttcc-aaccaaaacccaaacaagagcttatgtcatgggctcagccagc 59
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 421 ttatctgagcatttccaaaccaaaacccaaacaagagcttatgccatgggctcagccagc 362

                                                                       
Query: 60  tgtcctttcctgtcctgtcacgtttgcttattatgaggatctccaacgtttcatcttctg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtcctttcctgtcctgtcacgtttgcttattatgaggatctccaacgtttcatcttctg 302

                                                                       
Query: 120 tacacaaagacaaagtgctaagtaccttatatgataaaggcttaagcacagttttatatg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 301 tacacaaagacaaagtgctaagtaccttatatgataaaggcttaagcacagttttaaatg 242

                                                                       
Query: 180 ttg-gggttaattgctgaaccattctttaatttgggcagaatccttttaagtgttaaagt 238
           ||  |||||||||||||||||||||||||||||||||||||        |||||||  ||
Sbjct: 241 ttcagggttaattgctgaaccattctttaatttgggcagaa--------agtgtta--gt 192

                                                                       
Query: 239 ctctttatttttttccctggcgggctaatgaatagaccagcctagttcctatgaggaatt 298
           ||| |||  |  |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ctccttaggtggttccctggtgggctaatgaatagaccagcctagttcctatgaggaatt 132

                                                                       
Query: 299 tggtttcctaatgaatataattagcataacaaaaggagtggaaaagcaagtttattactt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tggtttcctaatgaatataattagcataacaaaaggagtggaaaagcaagtttattactt 72

                      
Query: 359 tcaaatcttag 369
           ||| |||||||
Sbjct: 71  tcacatcttag 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 771
Length adjustment: 9
Effective length of query: 360
Effective length of database: 762
Effective search space:   274320
Effective search space used:   274320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)