BAC Information

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BAC

Clone NameMSMg01-407E01
Chromosome1 (Build37)
Map Location 66,301,583 - 66,302,166
singlet/doubletsinglet
Overlap geneMtap2
Upstream genePip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407E01.T7 (MSMg01no407_e01.b1)MSMg01-407E01.TJ (MSMg01no407_e01.g1)
ACCAG505255AG505256
length740745
length of high quality
(start - end)
684 (42 - 725)584 (76 - 659)
definitionCHROMAT_FILE: MSMg01no407_e01.b1 PHD_FILE: MSMg01no407_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:50 2005CHROMAT_FILE: MSMg01no407_e01.g1 PHD_FILE: MSMg01no407_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCAGAGATCTACCTACCTCTGTTAAGCACAGACAAAAAGACCCCACCC
TGAAATTACTAATTTTACCATACCTGGGCCTAACCTTACTTTCTCCCAGG
CTGACCCTGAACTAAGAAATTTGCCTGCCTTTGTAAACATAAACAAAAAA
TTAGCTGGGTGGGATCTCCTGTGATCATGCCTCCCTAAATTTGTATCTCC
TACCTTAGTATCTTCCTGACAAGTTAGCTTACAGTGTAGCTTCTTTCGTT
CCTTTAGCTTTGTGAAGCCCCTCAAATAATTTATATTGCATCCTTACTTT
TTGCATAGTTTAGAAATTACATATTTTTGAACTCATGTTTTTGAACTCCT
GAAGGTCCCAGCATTTACCACTTTGCTAGGTCATCAGCTATACCTTTACC
TCCTGAACTCATGCTGTCTCTGATTATTATTATTAATGTTAACAGGGAGG
ACATTGCTTGAAGGAGGAATGTAAAAATATATACAGTATTATACAAACAA
ACCTTATGCCCACAACACCCATCAACACTGGTGTAGGCCTATGCCTGGTA
GCCCTGGCCAAGGGGCAGGAACCATTTCATTCTGTCCCCTCCAAGGCCAT
GCCCAAAATCTTGAAATCTTTTATCAGTTAATAGCTCCAGTACCACATTT
CCTTGGAGGCACAGGGTTAGATAATTTTTTTCATTCATGC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCCTTTCTTGCCAATTTTAGAGGG
GTAATTAAGCCTTCATTTAACACCAGCATTGAAATGGTGAAATTTATATG
GAAAATGTCACCAATGAAGTGCTCATTGGTGCCAGTACTGTGAGTCTCTT
TCACAGCATGTTTGCCACTTTAAAAGACATTCATTTCCTTAGATTATAAA
ATGTAAAATTTGATATTAAATACTATACTGGAATAATGCTGTGAGTAGAA
GGATAGTCGTAATAGTACTATTTAGAGTAAGATATTATGTATGTCTGTCC
AGCAATGGGGAAGCACTAAATTATGAGATTTTCGTAAGGTAAACTATATT
TAAAATCCTACTTTCAACAAACTGGAAGCTACAAAATGCAAAGTTTAAGA
TTAAGGAAAACTTTTTTTAAAAGTAAAACTCAACTATAATAAAAAGTTTG
AGTAAAAACAACATAAGACAAAAACCCACTGGTAGCACTATTAACTATAA
AAATAGAAAAAAAATTTAAAGGCAAAAACTATGCTCTAAAATGTTGCTTA
AAAACACTCTATAGTTTACTGTTCCGCTTTCTGTATGTATCTCATGTTAA
TTCCCTCATACAATAGTTCTAGATGATTTTAAATGTCTTCCCTGTATACG
TTTCAGAATACTGTGCTTTCAGTTCTCACCTGTAAGACCGCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_e01.g1 MSMg01no407_e01.g1 CHROMAT_FILE:
MSMg01no407_e01.g1 PHD_FILE: MSMg01no407_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:50 2005
         (584 letters)



>mm_chr1_66301383_66302366
          Length = 984

 Score = 1129 bits (584), Expect = 0.0
 Identities = 584/584 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcctttcttgccaattttagaggggtaattaagccttcatttaacaccagcattgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 atcctttcttgccaattttagaggggtaattaagccttcatttaacaccagcattgaaat 725

                                                                       
Query: 61  ggtgaaatttatatggaaaatgtcaccaatgaagtgctcattggtgccagtactgtgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggtgaaatttatatggaaaatgtcaccaatgaagtgctcattggtgccagtactgtgagt 665

                                                                       
Query: 121 ctctttcacagcatgtttgccactttaaaagacattcatttccttagattataaaatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctctttcacagcatgtttgccactttaaaagacattcatttccttagattataaaatgta 605

                                                                       
Query: 181 aaatttgatattaaatactatactggaataatgctgtgagtagaaggatagtcgtaatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaatttgatattaaatactatactggaataatgctgtgagtagaaggatagtcgtaatag 545

                                                                       
Query: 241 tactatttagagtaagatattatgtatgtctgtccagcaatggggaagcactaaattatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tactatttagagtaagatattatgtatgtctgtccagcaatggggaagcactaaattatg 485

                                                                       
Query: 301 agattttcgtaaggtaaactatatttaaaatcctactttcaacaaactggaagctacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agattttcgtaaggtaaactatatttaaaatcctactttcaacaaactggaagctacaaa 425

                                                                       
Query: 361 atgcaaagtttaagattaaggaaaactttttttaaaagtaaaactcaactataataaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atgcaaagtttaagattaaggaaaactttttttaaaagtaaaactcaactataataaaaa 365

                                                                       
Query: 421 gtttgagtaaaaacaacataagacaaaaacccactggtagcactattaactataaaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtttgagtaaaaacaacataagacaaaaacccactggtagcactattaactataaaaata 305

                                                                       
Query: 481 gaaaaaaaatttaaaggcaaaaactatgctctaaaatgttgcttaaaaacactctatagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaaaaaaaatttaaaggcaaaaactatgctctaaaatgttgcttaaaaacactctatagt 245

                                                       
Query: 541 ttactgttccgctttctgtatgtatctcatgttaattccctcat 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttactgttccgctttctgtatgtatctcatgttaattccctcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)