Query= MSMg01no407_e02.b1 MSMg01no407_e02.b1 CHROMAT_FILE:
MSMg01no407_e02.b1 PHD_FILE: MSMg01no407_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:51 2005
(599 letters)
>mm_chr1_89433861_89434859
Length = 999
Score = 1098 bits (568), Expect = 0.0
Identities = 591/602 (98%), Gaps = 7/602 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaggcctgcatggttacatagtgagaccaatgtttc---aaaaaaaaaaaagtg 61
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 198 gaattcaaggccagcatggttacatagtgagaccaatgtttcaaaaaaaaaaaaaaagtg 257
Query: 62 aaagaaagaaaaaaagaaaagaaaagaaaggaag----ataaataaataaataaacaaac 117
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 258 aaagaaagaaaaaaagaaaagaaaagaaaggaagataaataaataaataaataaacaaat 317
Query: 118 aaataaataaataaaagacaaggcacagatattactcactgacaggagctgaaggccgtt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaataaataaataaaagacaaggcacagatattactcactgacaggagctgaaggccgtt 377
Query: 178 catataaatggcgctaaggcagctgggtggccatatggactgagagacagagaggcagaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 catataaatggcgctaaggcagctgggtggccatatggactgagagacagagaggcagaa 437
Query: 238 cttgaggtatgaatgtctatggaagttaggtatttgatgagtagcaaacacaacagtgag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cttgaggtatgaatgtctatggaagttaggtatttgatgagtagcaaacacaacagtgag 497
Query: 298 ccttaagagaacaccattgataagttaatgtcagcaaaattaaaaatctatgctcactat 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccttaagagaacaccattgataagttaatgtcagcaaaattaaaaatctatgctcactag 557
Query: 358 aatgcaggaaattatgatacatgggtagaaatatttgcagtgtacatcttgggacaggaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aatgcaggaaattatgatacatgggtagaaatatttgcagtgtacatcttgggacaggaa 617
Query: 418 cgttctgatttattttggattttttgagccaggtcttgctctgtagcccagactgtcttg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cgttctgatttattttggattttttgagccaggtcttgctctgtagcccagactgtcttg 677
Query: 478 gacctcgccatgtaggcttaagtggccctgaatctaccctgatcctcttgtctctgtgtc 537
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 678 gacctcgccatgtaggcttaagtggccctgaatccaccctgatcctcttgtctctgtgtc 737
Query: 538 ctgagtcctggaattacagacacgagcaccatgcttggcttggccatggtttttgggttt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctgagtcctggaattacagacacgagcaccatgcttggcttggccatggtttttgggttt 797
Query: 598 gt 599
||
Sbjct: 798 gt 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_e02.g1 MSMg01no407_e02.g1 CHROMAT_FILE:
MSMg01no407_e02.g1 PHD_FILE: MSMg01no407_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:51 2005
(491 letters)
>mm_chr1_89593573_89594463
Length = 891
Score = 919 bits (475), Expect = 0.0
Identities = 487/491 (99%)
Strand = Plus / Minus
Query: 1 actttgtagaccaggctggcctcaaactcagaaatccgcctgcctctgcctcccgagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 actttgtagaccaggctggcctcaaactcagaaatccgcctgcctctgcctcccgagtgc 788
Query: 61 tgggattaaaggtgtgcaccaccacgcccggcgatattattcttttaagcaggagtaggg 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tgggattaaaggcgtgcaccaccacgcccggcgatattattcttttaagcaggagtaggg 728
Query: 121 aagatggcggactcaggaccctatcaacttgtaagggtgccacctcaatgcacatctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aagatggcggactcaggaccctatcaacttgtaagggtgccacctcaatgcacatctgtg 668
Query: 181 gctctgaaagtggggtacccctgagcaatcctatacatctttggaagtatcctgtctgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gctctgaaagtggggtacccctgagcaatcctatacatctttggaagtatcctgtctgac 608
Query: 241 ttctggaatgcttggaagagcctgctgtcttcccaccccaggcctggccagctgctcact 300
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttctggaatgcttgaaagagtctgctgtcttcccaccccaggcctggccagctgctcact 548
Query: 301 gttttaaatgtcatgctggtgacttcttgcagggagtgcctgagtagctccagccactcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gttttaaatgtcatgctggtgacttcttgcagggagtgcctgagtagctccagccactcc 488
Query: 361 ttctctccaaggggatcctcctgggtgccaatcacgtagatgtcatgggggatgtagtca 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 487 ttctctccaaggggatcctcctgggtgccaatcacatagatgtcatgggggatgtagtca 428
Query: 421 gcagagtcgtcccgtgtctttccctgccccttggagagaaaccaggacgtgatcttcttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcagagtcgtcccgtgtctttccctgccccttggagagaaaccaggacgtgatcttcttg 368
Query: 481 ggagggggtgc 491
|||||||||||
Sbjct: 367 ggagggggtgc 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
