Query= MSMg01no407_f06.b1 MSMg01no407_f06.b1 CHROMAT_FILE:
MSMg01no407_f06.b1 PHD_FILE: MSMg01no407_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:56 2005
(537 letters)
>mm_chr1_194264278_194265214
Length = 937
Score = 942 bits (487), Expect = 0.0
Identities = 515/525 (98%), Gaps = 2/525 (0%)
Strand = Plus / Plus
Query: 5 gaattctaatacccaagagtctcttggttagaacatcgtaaagctagatcttgggaccca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaatacccaagagtctcttggttagaacatcgtaaagctagatcttgggaccca 264
Query: 65 caactagcaccttctgagaggttcctagaaggatgctgctgccaactgcatcatgggtag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caactagcaccttctgagaggttcctagaaggatgctgctgccaactgcatcatgggtag 324
Query: 125 aatttctcccaacccagactatatggggaggggcatcaagggctgtggctgttggagctt 184
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 aatttctcccaacccagactatatggggaggggcatcaagggctgtggccattggagctt 384
Query: 185 aactccagtcagtttacctgacatgatgtgacatgttatgttgaccacacactgacctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aactccagtcagtttacctgacatgatgtgacatgttatgttgaccacacactgacctgg 444
Query: 245 gatagaggagcccaaggcccacatactctgtgggaagcagctagtcttaattatgttttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatagaggagcccaaggcccacatactctgtgggaagcagctagtcttaattatgttttc 504
Query: 305 tcgggtgtgctaatgacttccaggtcaggaacttagtaaccgagtgagcaatgtgcattc 364
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 tcgggtgtgctaatgactcccaggtcaggaacttagtaaccgagtgagcaatgtgcatgc 564
Query: 365 attaacacagaagcactgcagagatgtatggtggctgccctcagaggtgactcttcccta 424
|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct: 565 attaacacagaagcactgcagagatggatgctggctgcgctcagaggtgactcttcccta 624
Query: 425 cgaagcatcaagaagctgaaagatgttccaggttggaaacatccccctctcctgctgcgt 484
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgaagcatcaagaagctgaatgatgttccaggttggaaacatccccctctcctgctgcgt 684
Query: 485 gcacgtgcttacacacacacacacttacacacacacacacacaca 529
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 gcacgtgcttacacacacacacac--acacacacacacacacaca 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_f06.g1 MSMg01no407_f06.g1 CHROMAT_FILE:
MSMg01no407_f06.g1 PHD_FILE: MSMg01no407_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:56 2005
(449 letters)
>mm_chr1_194503710_194504555
Length = 846
Score = 830 bits (429), Expect = 0.0
Identities = 443/449 (98%), Gaps = 3/449 (0%)
Strand = Plus / Minus
Query: 1 acccagcaatgctaggattctgttcctgtgctccatcaaatagcaggttttcatgtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 acccagcaatgctaggattctgttcctgtgctccatcaaatagcaggttttcatgtcttt 587
Query: 61 ttccttgtttaataatttttagccctctaaattatccccaataattgaaatataatctgg 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttccttgtttaatcatttttagccctctaaattatccccaataattgaaatataatctgg 527
Query: 121 gttttaattaatgcatttgctataacatagagcatgcagatactgttctcacagtaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gttttaattaatgcatttgctataacatagagcatgcagatactgttctcacagtaaagg 467
Query: 181 agatgcgtttgcacatctgctgttaatgggatggtttgaattcttcccacgagtacatta 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 466 agatgcgtttgcacatctgctgttaatgggatgttttgaattcttcccacgagtacatta 407
Query: 241 ggctactgctcactcatgatgaagaagccccagcaagcttcttatttctccactcagcat 300
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 406 ggctactgctcactcatgat---gaagccccagcaagcttcttattcctccactcagcat 350
Query: 301 gaaggattgttctggagaaactgaaagtgctattggcataattaacaatcagagttgtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaaggattgttctggagaaactgaaagtgctattggcataattaacaatcagagttgtta 290
Query: 361 ttagagatgggcatctgctcaggacccagatatctgtagttctgggtccttgcctgctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttagagatgggcatctgctcaggacccagatatctgtagttctgggtccttgcctgctgg 230
Query: 421 acaaggtcagggctgaccaagcatgtatt 449
|||||||||||||||||||||||||||||
Sbjct: 229 acaaggtcagggctgaccaagcatgtatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 846
Length adjustment: 10
Effective length of query: 439
Effective length of database: 836
Effective search space: 367004
Effective search space used: 367004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
