Query= MSMg01no407_l21.b1 MSMg01no407_l21.b1 CHROMAT_FILE:
MSMg01no407_l21.b1 PHD_FILE: MSMg01no407_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:28 2005
(633 letters)
>mm_chr1_160768145_160769178
Length = 1034
Score = 1168 bits (604), Expect = 0.0
Identities = 624/631 (98%), Gaps = 1/631 (0%)
Strand = Plus / Minus
Query: 4 ggaattcccac-acactctgataatactaatctaccattttgctgacctcacatctactt 62
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ggaattcccacaacactctgataatactaatctaccattttgctgacctcacatctactt 775
Query: 63 taaatattgctcatttaatattttatgattattaagtatacatttttacacagcttttaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 taaatattgctcatttaatattttatgattattaagtatacatttttacacagcttttaa 715
Query: 123 tttttaaagcacaatgagaaatttaaatgaatttatggtagctgaatgagtaaagtcatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tttttaaagcacaatgagaaatttaaatgaatttatggtagctgaatgagtaaagtcatt 655
Query: 183 tatgtgtgtctaaatgtatatttctaggagtattggagagatgtgtgatgatggagacct 242
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 654 tatgtgtgtctaaatgtatatttctaggagtatcggagagatgtgtgatgatggagacct 595
Query: 243 gttgaatggagatgggtgctcaagagcatgtgaactggaggaaggcttcaattgtgcagg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gttgaatggagatgggtgctcaagagcatgtgaactggaggaaggcttcaattgtgcagg 535
Query: 303 tgagtctacagggttgggattatatcttacttttagagctgtatcagtgcattattttgt 362
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 534 tgagtctacggggttgggattatatcttacttttagagctctatcagtgcattattttgt 475
Query: 363 gaactgttagtttcctgtgtcttaatgatgattgaagcaataacaccaaatacttcacat 422
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaactgttagtgtcctgtgtcttaatgatgattgaagcaataacaccaaatacttcacat 415
Query: 423 atagtcactaatttaattctcactttaaccatgaagaaactaaatggaggcacaaaaggc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atagtcactaatttaattctcactttaaccatgaagaaactaaatggaggcacaaaaggc 355
Query: 483 ttaaatgatttatttttgcttatttatctgaaagtgctagttacagtttaagccaaggga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttaaatgatttatttttgcttatttatctgaaagtgctagttacagtttaagccaaggga 295
Query: 543 gagcagatctagaatttcatgctaaacagattgtattggtccctagcttgcccttaccaa 602
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagcagatctagaatttcatgttaaacagattgtattggtccctagcttgcccttaccaa 235
Query: 603 ggnctttcttgggtgctcatggatataccaa 633
|| ||||||||||||||||||||||||||||
Sbjct: 234 ggcctttcttgggtgctcatggatataccaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space: 637952
Effective search space used: 637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_l21.g1 MSMg01no407_l21.g1 CHROMAT_FILE:
MSMg01no407_l21.g1 PHD_FILE: MSMg01no407_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:28 2005
(488 letters)
>mm_chr1_160591330_160592217
Length = 888
Score = 905 bits (468), Expect = 0.0
Identities = 483/488 (98%)
Strand = Plus / Plus
Query: 1 cattctcgtttgcagctgaatagtctccttccctcctcttagaggcttcctgctgctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattctcgtttgcagctgaatagtctccttccctcctcttagaggcttcctgctgctgtg 260
Query: 61 tgcaaccctagaacctcaccttttccttaggtccactcaaccctattgtggaatttggat 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tgcaaccctagaacctcaccttttccttaggtccgctcaaccctattgtggaatttggat 320
Query: 121 atttacacgaatctggtttgcttgtttattatctagctggaaaatttatgcaggcaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttacacgaatctggtttgcttgtttattatctagctggaaaatttatgcaggcaggga 380
Query: 181 ccatatgtgtcttcttttgcgtcattgcatccttcatgcttagcacaggaaatggcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatatgtgtcttcttttgcgtcattgcatccttcatgcttagcacaggaaatggcccct 440
Query: 241 tgtagatggttagcaagcaggtgttgactgaagacaccattaagcagcaggcgcttttag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagatggttagcaagcaggtgttgactgaagacaccattaagcagcaggcgcttttag 500
Query: 301 taggtctatcttaaagagtatgtcttcctagtttttaaatgctcacttttttatttgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggtctatcttaaagagtatgtcttcctagtttttaaatgctcacttttttatttgaat 560
Query: 361 ctcaaacagaacagtataaagtgaggaacttgctgatggagtcaatgttaattaagagca 420
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagtcagaacagtataaagtgaggaacttgctgatggagtcaatgttaattaagagca 620
Query: 421 ggtattgggaagagcctgagtccaatgagccatgcagggcccactccctggcactgcttc 480
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ggtattgggaagagcctaagtccaatgagccatgcagggcccactccctgacactgcttc 680
Query: 481 attcacta 488
||||||||
Sbjct: 681 attcacta 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
