BAC Information

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BAC

Clone NameMSMg01-408B02
Chromosome1 (Build37)
Map Location 142,083,902 - 142,225,068
singlet/doubletdoublet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408B02.T7 (MSMg01no408_b02.b1)MSMg01-408B02.TJ (MSMg01no408_b02.g1)
ACCAG505873AG505874
length729729
length of high quality
(start - end)		439 (45 - 483)487 (78 - 564)
definitionCHROMAT_FILE: MSMg01no408_b02.b1 PHD_FILE: MSMg01no408_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:55 2005CHROMAT_FILE: MSMg01no408_b02.g1 PHD_FILE: MSMg01no408_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,083,902 - 142,084,336)(142,224,582 - 142,225,068)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACAATCACTTTTCTTTGCATATTTACCAGTTATGTATCTCTATGA
TAGCCTCTATCTGCTGTAAAAAGAGAAAGCTTTTTTGATGAAGGATGAGA
ACTGAACTTGTCTCTGGGTATTTAAGGACAAATATTTAGAATATAGTTGG
AAGCTGTATTAATTTAGCAAAATAGGGGTAATAAGTTTTCTCCTAAGACA
TTTCCAGCCATCATTCCTGGCTAGGTTTTCAATAACAGGCAGAAATCCCC
TCCTATTGAGTCTGCCTTAATACCAGTTAGGTATTGATTACTCTTGTGAT
GTTAGTGGCACTATTGTAGCATTTAGTGATGATATCTTTATTGAGCTAGT
TGTTCTGAGTAACAATTAATTAAACATTATAAAAAGTACAACAGTACCTA
AAGACATGTTGAAGGGAAAAGTGTTACGTAGAACCAATGTTTTGGAGAGA
ACTGTCTTAGCTCTGATTTTTGAACTAACAGCAGCTACAAGTACTTATTT
GTAACTAAATTTAATTTTAAGTTAATTTAGGGAAAAAATAAAAGGTTAGC
TAATACCCCGTGCCCCCAAGAAAATAAATAACCTCTGGAACGGATTTTCC
CCCAAGCAGGTAAAGATATCTATTCAAGTTAAACCTGCCCCGGTAATAAT
CTGATTTCTTTTTTAGGTATATTATTCTG

CGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGATAGCTGAAAAGAAACTATCA
TTTCCAAGTAGTAAATAATTTCAAGCAACTGGAATAAGAGTTGGGTGTTC
TTGTTTCATATGTACAAAAGCAAGGGCATTGATGTCTGGAGTAGGGGAGT
CACTGAGTTTACTTAAGACATATTCGTGTGTTAGCATATCAAACCACAAT
TTTACAAGACTGATCCTGCAGTCAGGGACTGTTCACGTTTTAGCATTGAA
TCCCTTTGGTGTATAAGCACTTTTCAATATGGTTATATTTACAGGAAAAC
ATCTCTTGGAGGTAATGTTCCTTTAAGTAAACTGATTTACTTCTTGACTA
GGAAGGCAACTGTCTCTGCCTTAAAAGTGCACAGCAGGCTAACTACATTA
AAGTATCGCATCTTTAGGTCCTATTCCAGACAATAAATATGTACAAGTCA
TGAAATTACTATCTACTATACTTAGGGGGCAATTATTTGAGCCATAATAA
GAATGTTAATGTCACAAGCTAGCCAGAGATGAATAACAAGAAGGATATAA
AAGGACCCAGAGGGATAGGAAGTTATGAATTAAGCTTAACTTTTGTATAT
CCAATGTAGAAAAGCTTTTACTTTACTAATTTGAATCCTTAACTAACCTC
ACTGCCCTTTCCTTTGATTTCCGATTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_b02.b1 MSMg01no408_b02.b1 CHROMAT_FILE:
MSMg01no408_b02.b1 PHD_FILE: MSMg01no408_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:55 2005
         (439 letters)



>mm_chr1_142083698_142084536
          Length = 839

 Score =  841 bits (435), Expect = 0.0
 Identities = 435/435 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacaatcacttttctttgcatatttaccagttatgtatctctatgatagcctct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaatcacttttctttgcatatttaccagttatgtatctctatgatagcctct 264

                                                                       
Query: 65  atctgctgtaaaaagagaaagcttttttgatgaaggatgagaactgaacttgtctctggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctgctgtaaaaagagaaagcttttttgatgaaggatgagaactgaacttgtctctggg 324

                                                                       
Query: 125 tatttaaggacaaatatttagaatatagttggaagctgtattaatttagcaaaatagggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatttaaggacaaatatttagaatatagttggaagctgtattaatttagcaaaatagggg 384

                                                                       
Query: 185 taataagttttctcctaagacatttccagccatcattcctggctaggttttcaataacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taataagttttctcctaagacatttccagccatcattcctggctaggttttcaataacag 444

                                                                       
Query: 245 gcagaaatcccctcctattgagtctgccttaataccagttaggtattgattactcttgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagaaatcccctcctattgagtctgccttaataccagttaggtattgattactcttgtg 504

                                                                       
Query: 305 atgttagtggcactattgtagcatttagtgatgatatctttattgagctagttgttctga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgttagtggcactattgtagcatttagtgatgatatctttattgagctagttgttctga 564

                                                                       
Query: 365 gtaacaattaattaaacattataaaaagtacaacagtacctaaagacatgttgaagggaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtaacaattaattaaacattataaaaagtacaacagtacctaaagacatgttgaagggaa 624

                          
Query: 425 aagtgttacgtagaa 439
           |||||||||||||||
Sbjct: 625 aagtgttacgtagaa 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_b02.g1 MSMg01no408_b02.g1 CHROMAT_FILE:
MSMg01no408_b02.g1 PHD_FILE: MSMg01no408_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:55 2005
         (487 letters)



>mm_chr1_142224382_142225268
          Length = 887

 Score =  942 bits (487), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatagctgaaaagaaactatcatttccaagtagtaaataatttcaagcaactggaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tgatagctgaaaagaaactatcatttccaagtagtaaataatttcaagcaactggaataa 628

                                                                       
Query: 61  gagttgggtgttcttgtttcatatgtacaaaagcaagggcattgatgtctggagtagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gagttgggtgttcttgtttcatatgtacaaaagcaagggcattgatgtctggagtagggg 568

                                                                       
Query: 121 agtcactgagtttacttaagacatattcgtgtgttagcatatcaaaccacaattttacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agtcactgagtttacttaagacatattcgtgtgttagcatatcaaaccacaattttacaa 508

                                                                       
Query: 181 gactgatcctgcagtcagggactgttcacgttttagcattgaatccctttggtgtataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gactgatcctgcagtcagggactgttcacgttttagcattgaatccctttggtgtataag 448

                                                                       
Query: 241 cacttttcaatatggttatatttacaggaaaacatctcttggaggtaatgttcctttaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cacttttcaatatggttatatttacaggaaaacatctcttggaggtaatgttcctttaag 388

                                                                       
Query: 301 taaactgatttacttcttgactaggaaggcaactgtctctgccttaaaagtgcacagcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taaactgatttacttcttgactaggaaggcaactgtctctgccttaaaagtgcacagcag 328

                                                                       
Query: 361 gctaactacattaaagtatcgcatctttaggtcctattccagacaataaatatgtacaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctaactacattaaagtatcgcatctttaggtcctattccagacaataaatatgtacaag 268

                                                                       
Query: 421 tcatgaaattactatctactatacttagggggcaattatttgagccataataagaatgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcatgaaattactatctactatacttagggggcaattatttgagccataataagaatgtt 208

                  
Query: 481 aatgtca 487
           |||||||
Sbjct: 207 aatgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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