Query= MSMg01no408_c04.b1 MSMg01no408_c04.b1 CHROMAT_FILE:
MSMg01no408_c04.b1 PHD_FILE: MSMg01no408_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:01 2005
(393 letters)
>mm_chr1_128364933_128365725
Length = 793
Score = 625 bits (323), Expect = 0.0
Identities = 366/387 (94%), Gaps = 12/387 (3%)
Strand = Plus / Minus
Query: 4 ggaattcaggattctatcattgagtggtatggtgttttggagaatatatttctaaacctg 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ggaattcaggattctagaattgagtggtatggtgttttggagaatatatttctaaacctg 651
Query: 64 ggacctgcattttgtgtgctttcatgttgtgtgctcttggacatcctcttgcctcgctgt 123
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 650 ggacctgcattttgtgtgctctcatgttgtgtgctcttggacatcctcttgccttgctg- 592
Query: 124 tgtaaagagactgtcagctggagtccatcagtctttgcaatctgaggcactcattgaaac 183
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 --------g---gtcagctggagtccatcagtctttgcaatctgaggcactcattgaaac 543
Query: 184 tatttattttattgtgatttaccttgtaccttgatagtgtgatccatatatggatgttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tatttattttattgtgatttaccttgtaccttgatagtgtgatccatatatggatgttaa 483
Query: 244 cttggaggcaactgctgaataaaaattcttttcaggacttttaagagaggttattttgaa 303
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cttggaggcaactgctgattgaaaattcttttcaggacttttaagagaggttattttgaa 423
Query: 304 tatgacaaaacatgatacattgaatgggctttcataggtatattagactgattgattgtt 363
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tatgacaaaacatgatacgttgaatgggctttcataggtatattagactgattgattgtt 363
Query: 364 cagataggacagactgtatgagtgatg 390
||||||||| || ||||||||||||||
Sbjct: 362 cagataggaaaggctgtatgagtgatg 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_c04.g1 MSMg01no408_c04.g1 CHROMAT_FILE:
MSMg01no408_c04.g1 PHD_FILE: MSMg01no408_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:01 2005
(417 letters)
>mm_chr1_128180343_128181165
Length = 823
Score = 756 bits (391), Expect = 0.0
Identities = 413/423 (97%), Gaps = 6/423 (1%)
Strand = Plus / Plus
Query: 1 tttccactttgaaacatctgggatcccaagaagaaaacttattttcatatataaatggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccactttgaaacatctgggatcccaagaagaaaacttattttcatatataaatggcc 260
Query: 61 ttttc-aaaaaatatacattatatactaaaatacaatttatacatgattacaattcattt 119
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcaaaaaaatgtacattatatactaaaatacaatttatacatgattacaattcattt 320
Query: 120 agaaattattttgttcagttgctgaattactccgttatg-----ttttttttgcaatttt 174
||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct: 321 agaaattattttgttcagttgctgaattattccgttatgggtttttttttttgcaattgt 380
Query: 175 tatgtttaatacaatattgcatgtatcccattactttgaatctctgcttgtattttacat 234
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtttaataaaatattgcatgtatcccattactttgaatctctgcttgtattttacat 440
Query: 235 tttttgatctcaaactaaaatttctgcagggaattagttaacaacatatagttttcatgg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttgatctcaaactaaaatttctgcagggaattagttaacaacatatagttttcatgg 500
Query: 295 actcagaaatatcagtaatataaattattactattcttacaggaaaagtgaaaaacaatt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcagaaatatcagtaatataaattattactattcttacaggaaaagtgaaaaacaatt 560
Query: 355 caaataaatgagctacctttcaggtaactatgaattgtccattcaatcaacaaaatcagg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaataaatgagctacctttcaggtaactatgaattgtccattcaatcaacaaaatcagg 620
Query: 415 tgt 417
|||
Sbjct: 621 tgt 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 823
Length adjustment: 9
Effective length of query: 408
Effective length of database: 814
Effective search space: 332112
Effective search space used: 332112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
