BAC Information

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BAC

Clone NameMSMg01-408F03
Chromosome1 (Build37)
Map Location 80,025,687 - 80,205,866
singlet/doubletdoublet
Overlap geneLOC100039325, A830043J08Rik
Upstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
Downstream gene2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408F03.T7 (MSMg01no408_f03.b1)MSMg01-408F03.TJ (MSMg01no408_f03.g1)
ACCAG506066AG506067
length731729
length of high quality
(start - end)		563 (47 - 609)495 (78 - 572)
definitionCHROMAT_FILE: MSMg01no408_f03.b1 PHD_FILE: MSMg01no408_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:16 2005CHROMAT_FILE: MSMg01no408_f03.g1 PHD_FILE: MSMg01no408_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,025,687 - 80,026,246)(80,205,372 - 80,205,866)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTACATTTCCCTGATGTCGTAGTCATCCAGGACTGCCCATCTAA
GTGTGATATGAACTTTCGATTGTTTGAAACAGCAGTCGCTCTTCCATCAA
GCCTCAGCTAGCCAGCCAGGCAGCTTGAGGCTGGAGACCAAGACAGTCTG
AAGGCTTCTTCATTTCCATGCCTGGCAGTAAATACTGGGCAGGATCAAAG
CATAGGGATGCTGAAACAGATGTAGCTCCTTGGACAACCCTCAAGAAGAG
ATCTGTGTGGTCTCCCCATAGAAGCTTGCCAATATGGAGTCTTTACAGCA
GCCGGAGTTTTTACATGTTGGCTTAAGAAAATGGAAGAGCATGCCTCAAG
AGAGAAGCACTAGCAACTATGAGTACAGAACACTTATCCCCAAACTGAGT
AGTGTACTGTACTGCACTGTACTGTGTCTTACATGTTCCAATTCAGTGAT
CACAAATTCATATCTGGGCAGAAGAAAGCTGGATCACCTTTTCCCTGCTG
TTTCCAGTGACTCTTCTGGAAGATTCAGAGGTGGCGTGGAGCTGAGCTTT
CATCCTGTTGCAGGGATTAAACATCACACTTGTCCCCACTTCTCCAAAAT
CCAGTTGAAAACTTCACCTTTATTCTTTGGCAGCCTCCGTTTGCATGGCT
TGATAAGCTATTTCAAACCCCAAGGTTTGGA

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCTTTAAGGCATTTCATATA
AGAGGAATTACGCAATATTATTTCTCTAGAAATAAGCAACTCATTTGCAG
GCTTCCTTTCTTCATATCTGCATCTCTAACCCATAGTCACACAGACTTTA
TTATCCTCTCTTCTTTGTTTCCTTGTGTTTCCATTCACCATCCCTATACC
AGGCTCACCTCAATGATACATTTTCTCTCATATCTGCACTCACTAGGTAC
CTGGGTTATGCTGGGCTTAGCAGGTGTGGCTCAGGGTATTGGCTGCTATA
GAATAGCAGCTTAGCATCAGAGGTTTGTCAGTGGATTAAGGAGGTTTTAA
GAACACAGCTAATTGGGAAAGGTTTTCCACTCTACTTGAGAGTCTTTCCT
CATCTATTTAGTTTGATTCTACCATTCTCTCCTTTGTGAAAAGCCACCCG
TCAATGAGACATGGCGCTGTTTACCTTCACAGATACCAGCCTGCTCCGCA
ATAGCTGAATCTTCTCTGATGCATTTTCTCATGTTTTTCAAGTTGAAACT
TGTAAGTGCGNGATGGGCGTTCTCCCTGTTCAACATAGCTGCTGATGTTT
TCTGAATTTGGGAAATCTTTGCTCTCAGTCGGGGCTTTATTTCCTTAAAA
GAAGAACCCCCTAGTGGATCGTGTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_f03.b1 MSMg01no408_f03.b1 CHROMAT_FILE:
MSMg01no408_f03.b1 PHD_FILE: MSMg01no408_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:16 2005
         (563 letters)



>mm_chr1_80025484_80026446
          Length = 963

 Score = 1021 bits (528), Expect = 0.0
 Identities = 552/560 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttacatttccctgatgtcgtagtcatccaggactgcccatctaagtgtgatat 63
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 204 ggaattcttacatttccctgatgtcgtagtcatccagtactgaccatctaagtgtgatat 263

                                                                       
Query: 64  gaactttcgattgtttgaaacagcagtcgctcttccatcaagcctcagctagccagccag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaactttcgattgtttgaaacagcagtcgctcttccatcaagcctcagctagccagccag 323

                                                                       
Query: 124 gcagcttgaggctggagaccaagacagtctgaaggcttcttcatttccatgcctggcagt 183
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 324 gcagcttgaggctggagaccaaaacagcctgaaggcttcttcatttccatgcctggcagt 383

                                                                       
Query: 184 aaatactgggcaggatcaaagcatagggatgctgaaacagatgtagctccttggacaacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaatactgggcaggatcaaagcatagggatgctgaaacagatgtagctccttggacaacc 443

                                                                       
Query: 244 ctcaagaagagatctgtgtggtctccccatagaagcttgccaatatggagtctttacagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 444 ctcaagaagagatctgtgtggtctccccatagaagcttgccaatatggactcttttcagc 503

                                                                       
Query: 304 agccggagtttttacatgttggcttaagaaaatggaagagcatgcctcaagagagaagca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agccggagtttttacatgttggcttaagaaaatggaagagcatgcctcaagagagaagca 563

                                                                       
Query: 364 ctagcaactatgagtacagaacacttatccccaaactgagtagtgtactgtactgcactg 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 564 ctagcaactatgagtacagaacacttatccccaaactgagtagtgtactgtactgcaccg 623

                                                                       
Query: 424 tactgtgtcttacatgttccaattcagtgatcacaaattcatatctgggcagaagaaagc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tactgtgtcttacatgttccaattcagtgatcacaaattcatatctgggcagaagaaagc 683

                                                                       
Query: 484 tggatcaccttttccctgctgtttccagtgactcttctggaagattcagaggtggcgtgg 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 684 tggatcaccttttccctgctgtttccagtgactcttctggaagattcagaggtggcatgg 743

                               
Query: 544 agctgagctttcatcctgtt 563
           ||||||||||||||||||||
Sbjct: 744 agctgagctttcatcctgtt 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no408_f03.g1 MSMg01no408_f03.g1 CHROMAT_FILE:
MSMg01no408_f03.g1 PHD_FILE: MSMg01no408_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:16 2005
         (495 letters)



>mm_chr1_80205172_80206066
          Length = 895

 Score =  903 bits (467), Expect = 0.0
 Identities = 488/495 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccctttaaggcatttcatataagaggaattacgcaatattatttctctagaaataagc 60
           ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 695 accccttcaaggcatttcatataagaggaattacacaatattatttctctagaaataagc 636

                                                                       
Query: 61  aactcatttgcaggcttcctttcttcatatctgcatctctaacccatagtcacacagact 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aactcatttgcaggctttctttcttcatatctgcatctctaacccatagtcacacagact 576

                                                                       
Query: 121 ttattatcctctcttctttgtttccttgtgtttccattcaccatccctataccaggctca 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct: 575 ttattatcctctcttctttgttttcttgtgtttccattcaccatccctatacctgactca 516

                                                                       
Query: 181 cctcaatgatacattttctctcatatctgcactcactaggtacctgggttatgctgggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cctcaatgatacattttctctcatatctgcactcactaggtacctgggttatgctgggct 456

                                                                       
Query: 241 tagcaggtgtggctcagggtattggctgctatagaatagcagcttagcatcagaggtttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tagcaggtgtggctcagggtattggctgctatagaatagcagcttagcatcagaggtttg 396

                                                                       
Query: 301 tcagtggattaaggaggttttaagaacacagctaattgggaaaggttttccactctactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcagtggattaaggaggttttaagaacacagctaattgggaaaggttttccactctactt 336

                                                                       
Query: 361 gagagtctttcctcatctatttagtttgattctaccattctctcctttgtgaaaagccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gagagtctttcctcatctatttagtttgattctaccattctctcctttgtgaaaagccac 276

                                                                       
Query: 421 ccgtcaatgagacatggcgctgtttaccttcacagataccagcctgctccgcaatagctg 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccgtcaatgagagatggcgctgtttaccttcacagataccagcctgctccgcaatagctg 216

                          
Query: 481 aatcttctctgatgc 495
           |||||||||||||||
Sbjct: 215 aatcttctctgatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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