Query= MSMg01no408_j19.b1 MSMg01no408_j19.b1 CHROMAT_FILE:
MSMg01no408_j19.b1 PHD_FILE: MSMg01no408_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:38 2005
(482 letters)
>mm_chr1_178680335_178681218
Length = 884
Score = 909 bits (470), Expect = 0.0
Identities = 477/480 (99%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 5 gaattctctcttgtgccttaaatgtcagtgattgtgaggttttgtagtctcatgctttgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaattctctcttgtgccttaaatgtcagtgattgtgaggttttgtagtctcatgctttgt 625
Query: 65 agagtttacaccattgtctagtttgaccatatgtttttggtgttaaagcagcaaagaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agagtttacaccattgtctagtttgaccatatgtttttggtgttaaagcagcaaagaatt 565
Query: 125 gtactgaagatgctttgttgtgttcttttaccatgtaaagagactttttccaaccatagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtactgaagatgctttgttgtgttcttttaccatgtaaagagactttttccaaccatagc 505
Query: 185 ataacaggatgttgaatgacagaggtaa--ttttttttttccgccataaaggcataattt 242
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 504 ataacaggatgttgaatgacagaggtaatgttttttttttccgccataaaggcataattt 445
Query: 243 ctggacaggaattatgcacatatgtatgttgggaaaatagggttttcttcatctctgtgt 302
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 ctggacaggaattatgcacatatgtatgttgggaaaagagggttttcttcatctctgtgt 385
Query: 303 tcaaagtccatgtggcatgaggaagtcttttccctttttatttttgtcttgttggtgttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaaagtccatgtggcatgaggaagtcttttccctttttatttttgtcttgttggtgttt 325
Query: 363 ttgctgtcatttaaaaagcatccatatctcgactcaaaaagtatgtgcaactgaaaacac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgctgtcatttaaaaagcatccatatctcgactcaaaaagtatgtgcaactgaaaacac 265
Query: 423 ccttgttaagcatttatgactagagcttgtttatcattagtgaactttttcatctgaatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccttgttaagcatttatgactagagcttgtttatcattagtgaactttttcatctgaatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 884
Length adjustment: 10
Effective length of query: 472
Effective length of database: 874
Effective search space: 412528
Effective search space used: 412528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_j19.g1 MSMg01no408_j19.g1 CHROMAT_FILE:
MSMg01no408_j19.g1 PHD_FILE: MSMg01no408_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:39 2005
(468 letters)
>mm_chr1_178528962_178529828
Length = 867
Score = 774 bits (400), Expect = 0.0
Identities = 451/469 (96%), Gaps = 6/469 (1%)
Strand = Plus / Plus
Query: 1 ttccccaaccaattttgcctacctttagttaggagggggaaaaatgaaaaaaagaaaaaa 60
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 204 ttccccaaccaa-tttgcctacctttagttaggaggggggaaaatgaaaaaaag--aaaa 260
Query: 61 aaaaagaaaaaacctaccaccttccttcgcactaagttatagccttaataagagactctt 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aaaaagaaaaaacctaccaccttccttcacactaagttatagccttaataagagactctt 320
Query: 121 tcttaaactactttgattttgcctataaaataattattcctttttctgttcttagtgttg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tc-taaactactttgattttgcctataaaataattattcctttttctgttcttagtgttg 379
Query: 181 catctatatgatcctagcagttttgcctctcagttaaactagac-tgggtttcaactgac 239
||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct: 380 catctatatgatcctagcagtcttgcctctcagttaaacta-acaagggtttcaactgac 438
Query: 240 ttcttgttgagatggttgggtaccacatcaaacccaaacaggctatgtgctggagaaagg 299
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct: 439 ttcttattgagatggttgggtaccacatcaaacccaaacaggctacgtgttggggaaagg 498
Query: 300 atcctgccagggtgatgcctgattggcactttcttgtcaaggacccagtgctcccatgca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atcctgccagggtgatgcctgattggcactttcttgtcaaggacccagtgctcccatgca 558
Query: 360 gctgtaagggagtcccacccataggccagagtcagcctcctggtctaccacagcctggct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gctgtaagggagtcccacccataggccagagtcagcctcctggtctaccacagcctggct 618
Query: 420 ttcagagctcatcacagccctgcccgggactaagctcanatattgacca 468
||||||||||| |||||||||||| ||||||||||||| ||| ||||||
Sbjct: 619 ttcagagctcaccacagccctgcctgggactaagctcaaatactgacca 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space: 392506
Effective search space used: 392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
