AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAACTGATGACTACTGAAGGGCTGAGGAGCACCTAAAAAAAGTTCA
ATGTCCTTAATCACCAGGGAAATGCAAATCAAAACAACTCTGAGTTTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGAT
GCTGGCGAGGATGTAGAGAAAGGATTGCAAGCTGGTACAACCACTCTGGA
AATCAGTTTGGCAGTTACTCAGAAAATTGGACACAGTTCTATCAGAAGAT
CCAGCAATACCACTCCTGGCCATATACCCAGAAGATGTTCCAACTTGTAA
GAAGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCATATGTGCTTCAACAGAGGAATGGACACAGAAA
ATGTGATACATTTACACAATGGAGTACTACTCAGCTATTATAAACCATGA
ATTGATGAAATTCTTACTCTTTTGCTTTTTGAGTGATAAAGCATTAAAAA
ATTTATTGGGACCTACTGTATTTTTGTTTCCTTGGAGAAAAGTTTTAATT
CCCTTGGCCCCTTATTAAATTGAGCCTTATGCGTGACATGTTGCACTTTT
TGGTTAAAAATATTTGAATTATGGCTTAATCATAATCGTTTTGTTCTTTA
AATTGCTACCCCCCTTTTCTCCCTCCCCCGACTTATTCCTTCTTGTTTGT
CCGTTTTTGTCTT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGGTTGGACCTCAGTTAAAAAGAAT
GCATGTAGGCCTACTTCAACTAATTGTCCCAGGGTAGGAGGTTGCCAAGT
TCACCAAACTATGAACACATTTAGCTAGAGAATATGTCTCAAGGGGCAAA
TGTAGAGAGTGATAGATCTGGACACCAGAAAAACACATTCATAAGTACAG
TATTTATATATGAAGTTTTCAAAAACATATTTTAAGAGAATTTTTTCAGT
GAATTTTTTTTCTTTTTTAAAATTAGGTATTTTCCTCATTTACATTTCCA
ATGCTATCCCAAAAGTCCCCCATAACCTCCCCCCCCACTCCCCTACCCAC
CCATTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAG
TTTGCAAGTCCAATGGGCCTCGCTTTCCACTGATGGCCAACTAGGCCATC
TTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTT
CATAATGTTGTTTGCACCTTCAGGGTTGGCAGATCTCTTTACCCCCTTTG
GAGACTTTCTCCTAGCTCCCCCTTTTTGGGCCCCTGTGGTTTTTCTCCTT
ATTTTGACGTGTTGGCCTTCCCCTTCTTTTTCTGCTCTGCTTCCCCCCGT
TAATTCTTCTACTAACACTTTCTATTTTTATTTTTCTCTTCCCTTTTTTC
TTTCCTCCATTTCTCTTCTTTTCCTTCTTTTTTT

Query= MSMg01no408_l08.g1 MSMg01no408_l08.g1 CHROMAT_FILE:
MSMg01no408_l08.g1 PHD_FILE: MSMg01no408_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:46 2005
         (413 letters)



>mm_chr1_50500257_50501071
          Length = 815

 Score =  764 bits (395), Expect = 0.0
 Identities = 410/415 (98%), Gaps = 3/415 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggttggacctcagttaaaaagaatgcatgtaggcctacttcaactaattgtcccaggg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 ctggttggacctcagttaaaaagaatgcgtgtaggcctacttcaactaattgtcccaggg 260

                                                                       
Query: 61  taggaggttgccaagttcaccaaactatgaacacatttagctagagaatatgtctcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggaggttgccaagttcaccaaactatgaacacatttagctagagaatatgtctcaagg 320

                                                                       
Query: 121 ggcaaatgtagagagtgatagatctggacaccagaaaaacacattcataagtacagtatt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaaatgtagagagtgatagatctggacaccagaaaaacacattcataagtacagtatt 380

                                                                       
Query: 181 tatatatgaagttttcaaaaa-catattttaagagaatttttt-cagtgaattttttttc 238
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tatatatgaagttttcaaaaaacatattttaagagaatttttttcagtgaattttttttc 440

                                                                       
Query: 239 ttttttaaaattaggtattttcctcatttacatttccaatgctatcccaaaagtccccca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttttaaaattaggtattttcctcatttacatttccaatgctatcccaaaagtccccca 500

                                                                       
Query: 299 taacctccccccccactcccctacccacccattcccactttttggccctggcgttcccct 358
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacctccccccc-actcccctacccacccattcccactttttggccctggcgttcccct 559

                                                                  
Query: 359 gtactggggcatataaagtttgcaagtccaatgggcctcgctttccactgatggc 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtactggggcatataaagtttgcaagtccaatgggcctcgctttccactgatggc 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 815
Length adjustment: 9
Effective length of query: 404
Effective length of database: 806
Effective search space:   325624
Effective search space used:   325624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)