Query= MSMg01no409_a21.b1 MSMg01no409_a21.b1 CHROMAT_FILE:
MSMg01no409_a21.b1 PHD_FILE: MSMg01no409_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:16 2005
(532 letters)
>mm_chr1_168984090_168985019
Length = 930
Score = 951 bits (492), Expect = 0.0
Identities = 514/522 (98%), Gaps = 2/522 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgatgatggcttcaggtgaaaaccctgcagtacccgagagaaacctgggagc 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattctctgatgagggtttcaggtgaaaaccctgcagtacccgagagaaacctgggagc 461
Query: 65 tcgagagggcacgtgccctcagactgtgctttcaagtgtgctctggccttggctgagaca 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcgagagggcatgtgccctcagactgtgctttcaagtgtgctctggccttggctgagaca 401
Query: 125 gatttctgaaaggacctccatgaagctgtggctgctggccgctgctgatagcaaagacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gatttctgaaaggacctccatgaagctgtggctgctggccgctgctgatagcaaagacag 341
Query: 185 catacactagcttcccacacccaccactcccttctccactattcaaggagtgcctgcagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 catacactagcttcccacacccaccactcccttctccactattcaaggagtgcctgcagt 281
Query: 245 aagtgggtgttgcctaaactcctgttctcagagtgcacagggttatgcctgccaggccct 304
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 280 aagtgggtgttgcctaaactcctgttctcagagtgcacaggg--atgactgccaggccct 223
Query: 305 ggaccacccaggattctgtgagcatttcctacatgcctgttgtgtgctgagcactcgata 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 222 ggaccacccaggattctgtgagcatttcctacatgcctgtcgtgtgctgagcactcgata 163
Query: 365 taacaatcacctcatttcaccttatcaatgcttgtcagaggtatgtgtccaggtcacagg 424
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 162 taacaatcacctcatttcaccttatcaacgcttgtcagaggtatgtgtccaggtcacagg 103
Query: 425 cgttttacagatgtagaaactgaggcctgcgaggattatgtaaaattacataatcatatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 cgttttacagatgtagaaactgaggcctgcgaggattatgtaaaattacataatcatatc 43
Query: 485 aacccagagtcatatcagtaactgctacagctgggatctaaa 526
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 aacccagagtcatatcagtaactgctacagctgggatctaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 930
Length adjustment: 10
Effective length of query: 522
Effective length of database: 920
Effective search space: 480240
Effective search space used: 480240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_a21.g1 MSMg01no409_a21.g1 CHROMAT_FILE:
MSMg01no409_a21.g1 PHD_FILE: MSMg01no409_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:16 2005
(560 letters)
>mm_chr1_168775335_168776294
Length = 960
Score = 1015 bits (525), Expect = 0.0
Identities = 553/566 (97%), Gaps = 6/566 (1%)
Strand = Plus / Plus
Query: 1 attcacataggtgaggaacaatagatatgctagatgactgaatttggaacaaaggctggt 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 195 attcacataggtgaggaacaatagacatgctagatgactgaatttggaacaaaggctggt 254
Query: 61 aacaaaataatgtaaaaatcaaggaaatggaataatgaagaaactgccgtatcttgctct 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 255 aacaaaataatataaaaatcaaggaaatggaataatgaagaaactgccgtatcctgctct 314
Query: 121 aaagaaagggcatcccagccagcctttatgaaacaccgctagatggttttctaagtctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaagaaagggcatcccagccagcctttatgaaacaccgctagatggttttctaagtctta 374
Query: 181 aagtgccaagagatcttcatactcaaaagtacactatgaatgaagtggtagattaacctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagtgccaagagatcttcatactcaaaagtacactatgaatgaagtggtagattaacctc 434
Query: 241 attgtacagctaatgagactggggcatccctaggcaagtaacttcccagtcctcacagtc 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attgtacagctaaggagactggggcatccctaggcaagtaacttcccagtcctcacagtc 494
Query: 301 aatgggtaaaagtgttgtcttcatccagccttgttctgagc------ttctaacctgcag 354
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 495 aatgggtaaaagtgttgtcttcatccagccttgttctgagcccgagcttctaacctgcag 554
Query: 355 tccttataagtagtctaagcttttcctgtcctctctgggccttggatcccatgggtgttc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tccttataagtagtctaagcttttcctgtcctctctgggccttggatcccatgggtgttc 614
Query: 415 gctgccaaggcacccttctaagattttaattaccctcttccaaggaggccttttcattag 474
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gctgtcaaggcacccttctaagattttaattaccctcttccaaggaggccttttcattag 674
Query: 475 caatagtaacgttcgcatctgtgtgacctattgctgcctacaagtcatgtggcctttgga 534
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 675 caatagtaacgttcgcatctgtgtgacctattgctgcctacaagtcatgtgacctttgga 734
Query: 535 gcgcangcaggcacagacactattca 560
||||| ||||||||||||||||||||
Sbjct: 735 gcgcaggcaggcacagacactattca 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
