BAC Information

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BAC

Clone NameMSMg01-409F23
Chromosome1 (Build37)
Map Location 56,890,751 - 57,060,200
singlet/doubletdoublet
Overlap geneSatb2, EG329160, 9130024F11Rik, LOC100042869
Upstream gene9130227L01Rik, Hsfy2
Downstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409F23.T7 (MSMg01no409_f23.b1)MSMg01-409F23.TJ (MSMg01no409_f23.g1)
ACCAG506873AG506874
length783739
length of high quality
(start - end)		459 (51 - 509)406 (56 - 461)
definitionCHROMAT_FILE: MSMg01no409_f23.b1 PHD_FILE: MSMg01no409_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:42 2005CHROMAT_FILE: MSMg01no409_f23.g1 PHD_FILE: MSMg01no409_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,059,894 - 57,060,200)(56,890,751 - 56,891,156)
sequence
NNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATCTCCAACAACAACAGGTGGATCCTTCTACGTTGGTCC
CTAATTAAGAAAATACCTTACAACTGGATCTTAAGGAGGTGTTTTATTTA
AAAAAAAATATTTTTATTTTATGTGTATGAGTACACTGTAGCTGTCTACC
AGAAGAGGGCATCAGATCCCATTACAGGTGGTTGTCCCGTGAAGTTGCTG
GGAATTGAACTCAGAACCTCTGAAAGCACAGCCCTTGTTCTCAACTGTTG
AGCCATCAACTCTCTAGCCCCTGGAGACAATTTCTTAATTGAAGCTTTCT
TCTCTCTGATGACTCTAGCTTGTGTAGAGCTGACAGGAAGCTCACCAATA
CAGCAGGGTTTCCCTGGTAGTCTGTTTCATTCCAGCCGTTAGGTTTCTGT
CTTGGCTTCCCTAGATGATAAACTTAAGTCCTTTCCTTTCCTCCTTAGGT
TACTTTAGGTCTGTATTTATCACAGCAACAGAAAACAACTGCTTTCCCTA
TTTTAAGNATTTACATTTTCTATAGAAAATCTTGTAATTTTTAAAGAATG
GCTAATTTTGGTTTAAAAGGTTGACCGAAAGGACCAATGCGACCCACGGG
GGGCCTGGTGGCTGCCGAAACCAAAAAAACATGTATTTTCCTGAGAGGGG
TTAAAAAGGGTGGGAATGGCCAATACGTGGGGGGGAAAAAATTAAGAATT
TTGCTCAACAACCAAGGTTTTAATCCTGTAACA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTGAGATGGAAAATAAGCCATCTGTGGAAAAATTAAGCTCCCATT
TCTGTGTCTTTTCACAGATCTGAATTAAGTCTCTAGTGAACTCTTTCAAA
TGTTTCAAACAGGTATGTTTAACATCTCCCAGGGGAGGCAGTAGCATGGA
GACCAATCACTGAATGGAAAATAAAAACAAAAACCTACATCTGTTAAAAG
ATGAAGTTCTGAGATAGCCAGACCTTAAGGAAGACAGCACCTGCTGTTCG
GCTTCAAGGATGCACATTGCATTGTGGGAAGCCACAGCTTGAAGGAAGAC
AGGTGACAGCTGAGTGGTATCTCCACTTATGACACTTGGAATGTCTCGCA
CAACATCCATTGCCATGTTTGATTTATATGCGCTGTTATAATCTGTGCTC
ATTACACTCACTTANAACTCACTATAGGCTTGTTATGGACTGTGGGCTAT
CTGCCATCGGCCTTTAAAAAGTGAGGGGTCAATTTGCCCACTGAATGGAA
GGTCTGTACCTGAACTTTTAAGAGGGGGTTAAAAAACGTGTGGTCTCGTG
ACATAATTAATTCAACCAATTATTTCTGGCTTAGAAAAATCCTCAAGGTC
CTTTCTTTTCGTGGAAAGAAACCTCTACCCCCTTCTTGTTGAACTATTGT
TTTTTTAATACCAATTTCTGCTTTTAACATCTTATTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_f23.b1 MSMg01no409_f23.b1 CHROMAT_FILE:
MSMg01no409_f23.b1 PHD_FILE: MSMg01no409_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:42 2005
         (459 letters)



>mm_chr1_57059342_57060200
          Length = 859

 Score =  563 bits (291), Expect = e-164
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 153 aagagggcatcagatcccattacaggtggttgtcccgtgaagttgctgggaattgaactc 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aagagggcatcagatcccattacaggtggttgtcccgtgaagttgctgggaattgaactc 800

                                                                       
Query: 213 agaacctctgaaagcacagcccttgttctcaactgttgagccatcaactctctagcccct 272
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agcacctctgaaagcacagcccttgttctcaactgttgagccatcaactctctagcccct 740

                                                                       
Query: 273 ggagacaatttcttaattgaagctttcttctctctgatgactctagcttgtgtagagctg 332
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ggagacattttcttaattgaagctttcttctctctgatgactctagcttgtgtagagctg 680

                                                                       
Query: 333 acaggaagctcaccaatacagcagggtttccctggtagtctgtttcattccagccgttag 392
           ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 679 acaggaagctcgccaatacagcagggtttccctggtagtctgttttattccagccgttag 620

                                                                       
Query: 393 gtttctgtcttggcttccctagatgataaacttaagtcctttcctttcctccttaggtta 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtttctgtcttggcttccctagatgataaacttaagtcctttcctttcctccttaggtta 560

                  
Query: 453 ctttagg 459
           |||||||
Sbjct: 559 ctttagg 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_f23.g1 MSMg01no409_f23.g1 CHROMAT_FILE:
MSMg01no409_f23.g1 PHD_FILE: MSMg01no409_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:42 2005
         (406 letters)



>mm_chr1_56890551_56891356
          Length = 806

 Score =  770 bits (398), Expect = 0.0
 Identities = 404/406 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagatggaaaataagccatctgtggaaaaattaagctcccatttctgtgtcttttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagatggaaaataagccatctgtggaaaaattaagctcccatttctgtgtcttttcac 260

                                                                       
Query: 61  agatctgaattaagtctctagtgaactctttcaaatgtttcaaacaggtatgtttaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatctgaattaagtctctagtgaactctttcaaatgtttcaaacaggtatgtttaacat 320

                                                                       
Query: 121 ctcccaggggaggcagtagcatggagaccaatcactgaatggaaaataaaaacaaaaacc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcccaggggaggcaatagcatggagaccaatcactgaatggaaaataaaaacaaaaacc 380

                                                                       
Query: 181 tacatctgttaaaagatgaagttctgagatagccagaccttaaggaagacagcacctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatctgttaaaagatgaagttctgagatagccagaccttaaggaagacagcacctgct 440

                                                                       
Query: 241 gttcggcttcaaggatgcacattgcattgtgggaagccacagcttgaaggaagacaggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcggcttcaaggatgcacattgcattgtgggaagccacagcttgaaggaagacaggtg 500

                                                                       
Query: 301 acagctgagtggtatctccacttatgacacttggaatgtctcgcacaacatccattgcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagctgagtggtatctccacttatgacacttggaatgtctcgcacaacatccattgcca 560

                                                         
Query: 361 tgtttgatttatatgcgctgttataatctgtgctcattacactcac 406
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtttgatttatatgcgctgttataatctgtgctcattacactcac 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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