Query= MSMg01no409_g04.b1 MSMg01no409_g04.b1 CHROMAT_FILE:
MSMg01no409_g04.b1 PHD_FILE: MSMg01no409_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:43 2005
(325 letters)
>mm_chr1_58769490_58770218
Length = 729
Score = 540 bits (279), Expect = e-158
Identities = 318/343 (92%), Gaps = 22/343 (6%)
Strand = Plus / Minus
Query: 1 gaggaaagctacaggaagccagagaggaagccaacttccgcctctaggggcgaaactgac 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaggaaagttacaggaagccagagaggaagccaacttccgcctctaggggcgaaactgac 577
Query: 61 cagtcaaggctcaaaaaaaaaaaaaaaaa----------aaagaaaaccccaaagaccgc 110
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 576 cagtcaaggctcaaaaaaaaaaaaaaaaaaaaaaaaaagaaagaaaaccccaaagaccgc 517
Query: 111 acatatcccaaatcccgccccccatgctacttctctgaaggaaggaaacaccccacttcc 170
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acataccccaaatcccgccccccatgctacttctctgaaggaaggaaacaccccacttcc 457
Query: 171 cacccaccc----cccacccgggtttctcgcagcttgggaaactaggttagcaagtggtg 226
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cacccacccaccccccacccgggtttctcgcagcttgggaaactaggttagcaagtggtg 397
Query: 227 acttgctaaagaattaaatgtcatcaaatttta----tgtacaacataaaacttctagaa 282
|||||||||||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct: 396 acttgctaaagaattaaatgtcatcaaa----aacaatgtacaacataaaacttctggaa 341
Query: 283 aaatccattgaagctgagtgtggtggtgtacgcccagctttgg 325
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaatccattgaagctgagtgtggtggtgtacgcccagctttgg 298
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 729
Length adjustment: 9
Effective length of query: 316
Effective length of database: 720
Effective search space: 227520
Effective search space used: 227520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_g04.g1 MSMg01no409_g04.g1 CHROMAT_FILE:
MSMg01no409_g04.g1 PHD_FILE: MSMg01no409_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:44 2005
(260 letters)
>mm_chr1_58541112_58541771
Length = 660
Score = 480 bits (248), Expect = e-140
Identities = 254/256 (99%)
Strand = Plus / Plus
Query: 5 gaattcaagttacatgtggtaaattacaaagctctcttgatacagacagctcaacagata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagttacatgtggtaaattacaaagctctcttgatacagacagctcaacagata 264
Query: 65 gccctcttaaacaggaattcaccccaagtgctattattgcttgcctatgatggagtttga 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccctcttaaacaggaattcatcccaagtgctattattgcttgcctatgatggagtttga 324
Query: 125 gagatgtaatagggaccgactgtggtgtttgaaggagatattccccacagtcttgtgcat 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagatgtaatagggaccgactggggtgtttgaaggagatattccccacagtcttgtgcat 384
Query: 185 ctgaatacctggtcccagctggtggcactatttaggtagggttagaaggcgtggccccgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgaatacctggtcccagctggtggcactatttaggtagggttagaaggcgtggccccgc 444
Query: 245 agggggacaaatgcct 260
||||||||||||||||
Sbjct: 445 agggggacaaatgcct 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space: 163401
Effective search space used: 163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
