Query= MSMg01no409_i14.b1 MSMg01no409_i14.b1 CHROMAT_FILE:
MSMg01no409_i14.b1 PHD_FILE: MSMg01no409_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:56 2005
(537 letters)
>mm_chr1_84205847_84206784
Length = 938
Score = 955 bits (494), Expect = 0.0
Identities = 527/538 (97%), Gaps = 1/538 (0%)
Strand = Plus / Minus
Query: 1 tgtaattttagcaagaatgagcttggagaggagaacagagatgccttcctctacctcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgtaattttagcaagaatgagcttggagaggagaacagagatgccttcctctacctcact 679
Query: 61 tctatggcaggagtgaacagttctcctgggtgctcaaggacacccttgtaaccagaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tctatggcaggagtgaacagttctcctgggtgctcaaggacacccttgtaaccagaggca 619
Query: 121 tctcaaagggaatgggctctgtgcatgggctttgtaaagggataagccaaactcct-ggc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 618 tctcaaagggaatgggctctgtgcatgggctttgtaaagggataagccaaactcctgggc 559
Query: 180 ttctaagctcaggctgtaccctacttctgggtataggatctgtagttttacttagacttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttctaagctcaggctgtaccctacttctgggtataggatctgtagttttacttagacttc 499
Query: 240 aactgttgcccgatgtctaagatgactttctaagacattgtgggtgaaatgaagattatt 299
|| ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 498 aagtgttgcctgaagtctaagatgactttctaagacgttgtgggtgaaatgaagattatt 439
Query: 300 aaatgaagaaaactctttgtggttgaaagaataattgatcgaactcatgggcagagtgat 359
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 438 aaatgaagaaacctctttgtggttgaaagaataattgatcaaactcatgggcagagtgat 379
Query: 360 aaaatcataccataaatggatgaattttagaataaaccatgtttttacatttacactgag 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 378 aaaatcataccataaatggatgaattttagaataaaccatgtttttacatttacactggg 319
Query: 420 gaaaaaaaaattcctactaaagcaccatatatattttttccctacaatctaataagactt 479
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 318 gaaaaaaaaattcctactaaagcatcatatatattttttccctactatctaataagaatt 259
Query: 480 gatgaccagggcttgtgtgggaaagtcaggtttacattctgtatataaattttgttat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gatgaccagggcttgtgtgggaaagtcaggtttacattctgtatataaattttgttat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space: 489056
Effective search space used: 489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_i14.g1 MSMg01no409_i14.g1 CHROMAT_FILE:
MSMg01no409_i14.g1 PHD_FILE: MSMg01no409_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:56 2005
(388 letters)
>mm_chr1_83958259_83959046
Length = 788
Score = 710 bits (367), Expect = 0.0
Identities = 382/387 (98%)
Strand = Plus / Plus
Query: 2 aatactttccttgccacaacactccactggggttattttcctctccattgaacatcacat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aatactttccttgccacaacactccactggggttattttcctctccattgaacatcacat 261
Query: 62 gcctgagattacaaatgagtttttgttttgttcccctgccaaaactgaagtacttacaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcctgagattacaaatgagtttttgttttgttcccctgccaaaactgaagtacttacaaa 321
Query: 122 ctaacctaacaaaggattctagataaatatcctagctaagttcataagtgcaaggagcat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctaacctaacaaaggattctagataaatatcctagctaagttcataagtgcaaggagcat 381
Query: 182 ttcagcacaaacaaaccggaaagagatgcttaagaatacattacaacccaagcacaaagc 241
||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 382 ttcagtacaaacaaactggaaagagatgcttaagaatacattacaacccaaacacaaagc 441
Query: 242 taatattcttacaaatacatgcagtagatcaaaaacattcttaccattaagctaatttaa 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taatatccttacaaatacatgcagtagatcaaaaacattcttaccattaagctaatttaa 501
Query: 302 ataatctgttctctgccgggaaactagaaaatgtttctgtcttagaagtctcgttgcaaa 361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ataatctgttctctgctgggaaactagaaaatgtttctgtcttagaagtctcgttgcaaa 561
Query: 362 ttttcttaagaaaatgatcatcatgtc 388
|||||||||||||||||||||||||||
Sbjct: 562 ttttcttaagaaaatgatcatcatgtc 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
