NGGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATCATTGTTCCGAGTGATCTGGTGTGGAGAGTAAGGAAA
AGAAAGATTCACAAGAACGGCATCCCTGGCCTGAGCAGCTGGACTTTCTG
GTGCCCTTAACTACAAGAGAAGGAGGGGACGAGCAAGTGACCTCCAGTGA
ACCGAAGACACTGAAGTCAGCTTTAGACATGGATCTGAACTGGCTGTGAG
ACATGCCAACTAGATGGAATGTCATTGGATATACAAGAACACTGTGCACA
GGATCCTGACGTGTAGTGAATCTAGCATGGTAACATGTATTTTTTTAAGT
GCTTTATTTGTTCTGCTTGTTACAAAGCAGTCTTCCTGTTCCTGTAAGCA
AGTCTCTTGGTATTTTCATGTTGTTCCTAGCTGTCACCACCGTCTGTCTC
CAGTGTCTCCACTGTAGTTTTTGAGATTATTTTCATTGTGTTTCCTTCTG
TATTTTGTTTTGTTGGTTGTTAGTTTATTTGTTTAAGGCAGGGTCTTACT
TTGTAGTCCTGGCTGTCCTAGAACTCACTGTGTAGACCAAGCTGCACTCT
AACACACAGAGGTCTGCATTGACTCCCCCGTATCTGAAGGGCATGGTTTA
AAAGATTATGCCCCCTAACCCGAATTTTCGGGTTTTCTTTTTTTTAAAAA
AATATTTTGGTTAATGGGAGGAACCCGGAGCTGGTCTTTTAACCCCCCTT
ACAAGGAGTCTACTTTTTTTTTG

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTGGAATAATAAAAAAACCTAG
GGTAGCAAAAAATATTCTCAATGATAAAAGAATACCTGGTGGAATCACCA
TGCCTGACATTAAGCTGTACTACAGAGCAATTGTGATAAAAACTGCATGG
TACTGGTCCAGTGACAGACAGGTAGATCAATGGAATAGAATTGAAGACCC
AGAAATGAATCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTA
AAACCATCCAGTGGAGAAAAGACAGCATTTTCAACAAATAGTGCTGGTAC
AACTGGCGGTTATCATGTAGAAGAATGCGAATTGATCCATTCTTATCTCC
TTGTACAAAGCTCAACTCTAAGTGGATCAAGAAACTCCACATAAAACCAG
AGACACTGAAATTAATAGAGGAGAAAATAGGGAAAAGCCTTGAAGATATG
GGCACAGGGGAAAAATTCCTAAACAGAACAGCAATGGCTTGTGCTGTAAG
ATCAAGAATTGACAAATGAGACCTCATAAAATTGCAAAGCTTCTGTATGG
TGAAAGACACTGTTAATAAGACAAAAAGGCCACCAACAGATTGTGAAATG
ATTTATACCAATCCTAAATCTGATAGGGAACTATTATCCAATATGTACAT
ATATATCTATATCTATCTATCTATCCATCTATCTATCTATCTATCTATCC
ACCN

Query= MSMg01no409_i22.b1 MSMg01no409_i22.b1 CHROMAT_FILE:
MSMg01no409_i22.b1 PHD_FILE: MSMg01no409_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:57 2005
         (459 letters)



>mm_chr1_16975783_16976640
          Length = 858

 Score =  801 bits (414), Expect = 0.0
 Identities = 420/422 (99%), Gaps = 1/422 (0%)
 Strand = Plus / Minus

                                                                       
Query: 38  gagagtaaggaaaagaaagattcacaagaacggcatccctggcctgagcagctggacttt 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gagagtaaggaaaagaaagattcacaagaacggcatccctggcctgagcagctggacttt 799

                                                                       
Query: 98  ctggtgcccttaactacaagagaaggaggggacgagcaagtgacctccagtgaaccgaag 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctggtgcccttaactacaagagaaggaggggacgagcaagtgacctccagtgaaccgaag 739

                                                                       
Query: 158 acactgaagtcagctttagacatggatctgaactggctgtgagacatgccaactagatgg 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 acactgaagtcagctttagacatggatctgaactggctgtgagacatgccaactagatgg 679

                                                                       
Query: 218 aatgtcattggatatacaagaacactgtgcacaggatcctgacgtgtagtgaatctagca 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aatgtcattggatatacaagaacactgtgcacaggatcctgacgtgtagtgaatctagca 619

                                                                       
Query: 278 tggtaacatgtatttttttaagtgctttatttgttctgcttgttacaaagcagtcttcct 337
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgggaacatgtatttttt-aagtgctttatttgttctgcttgttacaaagcagtcttcct 560

                                                                       
Query: 338 gttcctgtaagcaagtctcttggtattttcatgttgttcctagctgtcaccaccgtctgt 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttcctgtaagcaagtctcttggtattttcatgttgttcctagctgtcaccaccgtctgt 500

                                                                       
Query: 398 ctccagtgtctccactgtagtttttgagattattttcattgtgtttccttctgtattttg 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctccagtgtctccactgtagtttttgagattattttcattgtgtttccttctgtattttg 440

             
Query: 458 tt 459
           ||
Sbjct: 439 tt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 858
Length adjustment: 10
Effective length of query: 449
Effective length of database: 848
Effective search space:   380752
Effective search space used:   380752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)