BAC Information

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BAC

Clone NameMSMg01-409K11
Chromosome1 (Build37)
Map Location 79,094,530 - 79,095,093
singlet/doubletsinglet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409K11.T7 (MSMg01no409_k11.b1)MSMg01-409K11.TJ (MSMg01no409_k11.g1)
ACCAG507087AG507088
length772757
length of high quality
(start - end)
571 (49 - 619)582 (77 - 658)
definitionCHROMAT_FILE: MSMg01no409_k11.b1 PHD_FILE: MSMg01no409_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:05 2005CHROMAT_FILE: MSMg01no409_k11.g1 PHD_FILE: MSMg01no409_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGAGAGGATC
CGCGGAATTCCATACAATGACTTTGATCATACTCACTCTCTCTCTCAGCT
CCTCCCAGATTCATCACCCTTCCTCACCAGATCCATCACACCCAACCCTG
TGTCCTCCTCTCCTTCATCCATCATACTCAGTTTGCACTGCCCATATTTT
CATGAATGTGTGGTCTCCCACTGCTGTGTGTGTAACCTATCTGTTTTCCT
GTGAGAAGAAGGTAGATCTTAGGAGAAGTGTGGGTAATGAGTGGCTTTGT
AATCTATCAACATAGATTTCTTTTTTAGTTTCTTATATCACAACTAGGTT
GGGAATTATTCTTAAAATGATTATGCTTACAAGGGAATCTTATGCTTTCA
TTCAGATCCTATACACCACTTAACAAGTCTGTCCTTTCTGTTAAATCTCA
AATCTCATTTCAGAGTTTTACAGATTTTCTAAAGTAACAATTACCTTTAA
GACAGCCATGATGGAGAGTCTTGCCCAACACCCGCAAGGGCCCACATGGG
ACCCCCCACGGGATCCTAAGACCTCTGGTGAGTGGAACACAGCACCTGCC
CCAATCCAATCGCGCGGAACCTGAGACTGTGGTACATAGGGAAGCAGGCT
ACCCGGGCCTGATCTGGGGCACAAGTCCCTTCCGCTCGACACGAGCCCCG
GGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGG
GACCCCTCACGGGATCCTAAGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGATTACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACATTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCTTCAGAAAATTGGGCATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGCGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATACTGAG
TGAGGTAACACATTCATAAAGGAACTCTCACAATATGTACTCACTGATAA
GTGGATATTAGCCCCCTACCTAGGATACCCAAGATATAAGATACAATTTG
CTAACCCCTTAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGC
CCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_k11.b1 MSMg01no409_k11.b1 CHROMAT_FILE:
MSMg01no409_k11.b1 PHD_FILE: MSMg01no409_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:05 2005
         (571 letters)



>mm_chr1_79094324_79095293
          Length = 970

 Score = 1046 bits (541), Expect = 0.0
 Identities = 559/565 (98%), Gaps = 1/565 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccatacaatgactttgatcatactcactctctctctcagctcctcccagattcat 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccatacaatgaatttgatcatactcactctctctctcagctcctcccagattcat 266

                                                                       
Query: 67  cacccttcctcaccagatccatcacacccaaccctgtgtcctcctctccttcatccatca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacccttcctcaccagatccatcacacccaaccctgtgtcctcctctccttcatccatca 326

                                                                       
Query: 127 tactcagtttgcactgcccatattttcatgaatgtgtggtctcccactgctgtgtgtgta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tactcagtttgcactgcccatattttcatgaatgtgtggtctcccactgctgtgtgtgta 386

                                                                       
Query: 187 acctatctgttttcctgtgagaagaaggtagatcttaggagaagtgtgggtaatgagtgg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acctatctgttttcctgtgagaagaaggtagatcttaggagaagtgtgggtaatgagtgg 446

                                                                       
Query: 247 ctttgtaatctatcaacatagatttcttttttagtttcttatatcacaactaggttggga 306
           ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 447 ctttgtaatctatcaacatggatttcttttt-agtttcttatatcacaactaggttggga 505

                                                                       
Query: 307 attattcttaaaatgattatgcttacaagggaatcttatgctttcattcagatcctatac 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attattcttaaaatgattatgcttacaagggaatcttatgctttcattcagatcctatac 565

                                                                       
Query: 367 accacttaacaagtctgtcctttctgttaaatctcaaatctcatttcagagttttacaga 426
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cccacttaacaagtctgtcctttctgttaaatctcaaatctcatttcagagttttacaga 625

                                                                       
Query: 427 ttttctaaagtaacaattacctttaagacagccatgatggagagtcttgcccaacacccg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttttctaaagtaacaattacctttaagacagccatgatggagagtcttgcccaacacccg 685

                                                                       
Query: 487 caagggcccacatgggaccccccacgggatcctaagacctctggtgagtggaacacagca 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caagggcccacatgggaccccccacgggatcctaagacctctggtgagtggaacacagca 745

                                    
Query: 547 cctgccccaatccaatcgcgcggaa 571
           ||||||| ||||||||| |||||||
Sbjct: 746 cctgccctaatccaatcacgcggaa 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space:   538560
Effective search space used:   538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)