BAC Information

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BAC

Clone NameMSMg01-409K17
Chromosome1 (Build37)
Map Location 91,364,713 - 91,365,015
singlet/doubletsinglet
Overlap geneCentg2
Upstream geneGlrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409K17.T7 (MSMg01no409_k17.b1)MSMg01-409K17.TJ (MSMg01no409_k17.g1)
ACCAG507099AG507100
length780763
length of high quality
(start - end)
---303 (289 - 591)
definitionCHROMAT_FILE: MSMg01no409_k17.b1 PHD_FILE: MSMg01no409_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:07 2005CHROMAT_FILE: MSMg01no409_k17.g1 PHD_FILE: MSMg01no409_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGATATTTGCCACATCCACTCATGCTACATGCTGTCTTCCA
AGGCCAAATATTTTTAAAGATATTTGCCCTTTCTTGCCTGTCACCAACAC
GATATGCTTTAAGAAAACAAACTTAAAAGCACAAATTGTTCTGCCTTTGA
CTACTCTTGACCCTGGACTGTGAGGCTCCAGACAGCTGTGTGTCACTCTG
CAACAGCACGGACCACAGAGAGCCTTCATGTATCTGCCCTTGATGCCCAC
AACTCTTGCAAGGCTGACCAACTGCTTCTAACAAGGTAACATTCACTATG
CTGTAGATGTGCAAAAACATATATGACGCGGTTCTGTTAGAAGCCTTAAG
CAAGAAATTGCCAGCTGCGCAACCATGAGAGCCTGAGATCATATCCCACA
CACTCATGTAAAAACTTACTTGTAGTAGCCCAAGATGGCCACCCTAATGC
TCTGGAGACGGATAGAGGTAGATCACCAAAACTCACTGGCCAACCAGTCT
AGCCAGATAGGATGCCTGAGATCATAACATACGCTGACTTACTTAGAACA
CAAAATCCCTTAATGGAGACATCACATGTACAAGTGTGTCTTCCACTGCA
GGGGGACAATGTGAATACACACCTCCCAAACATGTCCTACACAAACACTT
CACCTAATATCCCCCTTAAACACAAACACCACTTCTCCTTTAAAAAAGAA
AAGGACCTAACAAAATGACCCTCACCCAAA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGATTACAGGCGCTATGTGAG
CAAATATACACGCCTGTGTTGACAGAGATGCATCATGCAGGCACCATGTG
GCATACACTAAATGCATTTCACAAAAGTCTGCTTGATAGGAGACTTCAGG
GACCCCTACAACCCACGTGGCCTGGACAGTCTCAGTCAGATAAGCGACTT
CTGGACCCACACAGCTCATGGAGGTAGGCCACAGTAGCCACAAGAGACTG
ATACCTCAATCACTTGTCTAGTAATCTACAACCAGCAAGAGGCTACAATA
CTGTCCCTGCCTCTCCAGACCTCCAAGGCCATCCCTGCAGACAGAGACAC
ATCTACAAATCATGTGACCTTCCTCTCCCCATGTTGCCAGAATCAAACCT
CTGCTTCCTCCTGTCCTTCTTCACCCCACTGCTCACAAACACTATTAGGC
CGCCCTCCTACTATAGCGTTTAGAGTTGACTGTTTCCCACCCACCCCAAA
CCCCTGCCTGCTCCCCCACCTCCCTTACCAAGCCCTCAGACCAACCACTC
ATCACCCCCGTCACTGTCTACCACCTGAGCAGGGCCCCACAGCCCCACCA
GCTCTGCCCTGGCAAGTGATCTAATCAGTTCTCATCAAACCTTGGAATCG
GATGGGCCTCTCACGGTCTCTTGATCCCCTGTTCGTCTGTCACATAGCCC
CCCTATATTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_k17.g1 MSMg01no409_k17.g1 CHROMAT_FILE:
MSMg01no409_k17.g1 PHD_FILE: MSMg01no409_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:07 2005
         (303 letters)



>mm_chr1_91364513_91365215
          Length = 703

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaagagactgatacctcaatcacttgtctagtaatctacaaccagcaagaggctacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cacaagagactgatacctcaatcacttgtctagtaatctacaaccagcaagaggctacaa 444

                                                                       
Query: 61  tactgtccctgcctctccagacctccaaggccatccctgcagacagagacacatctacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tactgtccctgcctctccagacctccaaggccatccctgcagacagagacacatctacaa 384

                                                                       
Query: 121 atcatgtgaccttcctctccccatgttgccagaatcaaacctctgcttcctcctgtcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atcatgtgaccttcctctccccatgttgccagaatcaaacctctgcttcctcctgtcctt 324

                                                                       
Query: 181 cttcaccccactgctcacaaacactattaggccgccctcctactatagcgtttagagttg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cttcaccccaatgctcacaaacactattaggccgccctcctactatagcgtttagagttg 264

                                                                       
Query: 241 actgtttcccacccaccccaaacccctgcctgctcccccacctcccttaccaagccctca 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 actgtttcccacccaccccaaacccctgcctgcttccccacctcccttaccaagccctca 204

              
Query: 301 gac 303
           |||
Sbjct: 203 gac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)