NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACAGTTATAGCATAAGAACATGAGGTTAAATCTCTGAAAT
CTTTCAAAATGAGAAAGGGTGGACCTTAAAACAAATGTAATGTGAGGATT
GAAGAGTTCAATAAATCATCTCTCATTATGCAGAAACATTAGCAAATAAC
AAATAGGAAAATAAATATTTCATGAAACCGGATTCAGTGACTAATTTCCA
GAATCCTACTCCATCTTTAAAGCATTATTTGCTAGCTCATGGATGTAGTG
TTTTTATGAATCACGCAGGATGGTTGTTAAATCCTCTTAGACACAGTGTT
AATACAGTGGTAACATGATCTCCCACTTTCTACATACATTGGAGAGATCA
GAAAAGAAAATAACATTGTGGTGGCTCACTTACAAAATAACATAATTCTT
TCCTATCTTATTAAAGACATGTCCATTTGCTGCAATATAACTTGTTTGAA
AGAGGGAAAGTTACTCATTTTAATGACTATGAAATTAAAATGTATCCAAT
TTGTGGAGATGAAATGAATGTCCCATCGAACCAGATATATTTAGAGTCTG
TCAGGTACTTTTCCCTCTTCAATGGNTGTATTTCTCTAGGTGAAATTTCA
TTTTGAAATTTAGGCCTCTTATATGGATTTTTACACATTTACAAGACAAA
TTCTTTTTTCTCTCCAAAATATAATTTAGAGGGGATTCCTACTTTTCCAA
TTAAAAAATGAAAAAAATTGGTTATT

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTGGCTTTGTACTCCATTT
TTCATTTGGCATATTTGGTTTGCTGCCTTGAGCTCTTTATGTATTTAAGA
GATATTATTTCTCTACCATATGTAAGATTGGTAAATATCTTTTCCTATTC
TCTATGCTGATACTTTGTCCTGTTGATGATGCCCTTATCTTTGCAAAAGC
ATTTCAGTTTCATGAGGCCCCAATTTATTAATTGTTGATCTTAGTATCAG
AACTATTAGTGTCCTGTGGAGGAAATTGTTTTCTGTGCCAATGAGTTCAA
GGAATTTCCACTTTTTCTCTTTTATTAGATTCAGTATATGTTTTTATGTT
GATGTCTTCAGTCCACTTGGACTTCAATTTTGTGTAGGGTGATATATATG
TGTATATTTGCATTCTCTTTAGTACTGCTTTCATTGTGTCCAATGAATTT
TTATGTTTTATGCATTCATTTTCACTGAATTTTTTGGAAGTATTTAATTT
CTTTCTTTATTACTGTCATGATATTATAGTCCTCANGAGAAAGTTGCTCA
NATTCATGAATTTGGAGGTCTTTTTGTATTCCCATTGTTATTGAAATCCA
GTGGTAAACTCTTGTGGTCTGATACGAGGGGAGCCACGGGTCAATTCAAT
TTTCTTTAATCCGGTGAAATCTGATTTGGGGCCAAAAATACGGTCCGTTT
TAAAAAACGG

Query= MSMg01no409_l19.b1 MSMg01no409_l19.b1 CHROMAT_FILE:
MSMg01no409_l19.b1 PHD_FILE: MSMg01no409_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:12 2005
         (570 letters)



>mm_chr1_141914209_141915178
          Length = 970

 Score = 1033 bits (534), Expect = 0.0
 Identities = 558/566 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagttatagcataagaacatgaggttaaatctctgaaatctttcaaaatgaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagttatagcataagaacatgaggttaaatctctgaaatctttcaaaatgaga 264

                                                                       
Query: 65  aagggtggaccttaaaacaaatgtaatgtgaggattgaagagttcaataaatcatctctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggtggaccttaaaacaaatgtaatgtgaggattgaagagttcaataaatcatctctc 324

                                                                       
Query: 125 attatgcagaaacattagcaaataacaaataggaaaataaatatttcatgaaaccggatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attatgcagaaacattagcaaataacaaataggaaaataaatatttcatgaaaccggatt 384

                                                                       
Query: 185 cagtgactaatttccagaatcctactccatctttaaagcattatttgctagctcatggat 244
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 cagtgactaaattccagaatcctactccatctttaaagcattatttgctaactcatggat 444

                                                                       
Query: 245 gtagtgtttttatgaatcacgcaggatggttgttaaatcctcttagacacagtgttaata 304
           ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 445 gtagtgtctttatgaatcactcaggatggttgttaaatcctctcagacacagtgttaata 504

                                                                       
Query: 305 cagtggtaacatgatctcccactttctacatacattggagagatcagaaaagaaaataac 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 cagtggtaacatgatctcccactttctacatacattggagagatcagaaaagaaaatatc 564

                                                                       
Query: 365 attgtggtggctcacttacaaaataacataattctttcctatcttattaaagacatgtcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attgtggtggctcacttacaaaataacataattctttcctatcttattaaagacatgtcc 624

                                                                       
Query: 425 atttgctgcaatataacttgtttgaaagagggaaagttactcattttaatgactatgaaa 484
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 atttgctgcaatataacttgtttgaaaaagggaaagttactcattttaatgactatgaaa 684

                                                                       
Query: 485 ttaaaatgtatccaatttgtggagatgaaatgaatgtcccatcgaaccagatatatttag 544
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 ttaaaatgtatccaatttgtggagatgaaatgaatgtcccatcgacccagatatatttag 744

                                     
Query: 545 agtctgtcaggtacttttccctcttc 570
           ||||||||||||||||||||||||||
Sbjct: 745 agtctgtcaggtacttttccctcttc 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)