BAC Information

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BAC

Clone NameMSMg01-409P11
Chromosome1 (Build37)
Map Location 51,450,418 - 51,631,776
singlet/doubletdoublet
Overlap geneObfc2a
Upstream geneTmeff2, Sdpr, LOC383504
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409P11.T7 (MSMg01no409_p11.b1)MSMg01-409P11.TJ (MSMg01no409_p11.g1)
ACCAG507326AG507327
length800769
length of high quality
(start - end)		466 (48 - 513)435 (77 - 511)
definitionCHROMAT_FILE: MSMg01no409_p11.b1 PHD_FILE: MSMg01no409_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:32 2005CHROMAT_FILE: MSMg01no409_p11.g1 PHD_FILE: MSMg01no409_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,450,418 - 51,450,879)(51,631,342 - 51,631,776)
sequence
NATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAAAGTGTTTCACTGAAAAACCATCCACCTGGTTGACTGAAT
ACAGTTAGCAATGTTGTTCCGTGGGGTCTCCTTGCTTAATCTTCTGTTTT
ATTTTGTCACAGGTACTACTGAGTAGGATGCACACTGTTCTCCTTTTTCC
CTTCCCATGTCCTGCACTTCTTCATTGACCCACAGGGTGATTTTCAATAT
TGGTTTGCAGCCTAGAATTACTTGGAGACATTTGCTTATAAACTAATGCC
TAGAGTCCAGCTGCAGAAATTTTTGCTAAAGTGGTTTGGGATATCCCTTG
GAAATCAGTGTGTTTTCTAAAACGTTCTGGGAGGGTCTAATACAAACTCT
AGACTACAAACTACTAAGCTTGGTAATATAGAAATTCCAGGTAATCTGTG
AAGTCCTGTCAACGCATCCAGGGGCAGAGCTATTCTGATAGCGCTGGGTT
TCGTCTCCTTGCCTTTGCCATTGAAGCACATCCTGCTTTCACCATTTCCA
GGTTTTTTCCACTTCACTGATTTGTCTTTTTCGCCCTGATACTAATTGTA
CCCCCCTATTTAAAATTTTTTATGAATTATTGGAATCCCCCCTCCTTTGT
ACCCAATTATATTTTCCCTTACCTTCATATTTTTTCCTCAATACTTTACA
AAATTCCCCAAGAGACCTCCCTTGTTTTTTCCTTACAAATTTCCCCCCTA
TTTTCCTCCTTTCTTTTCCCTATTTAATTAGTGAATCTTTCCTCTATCGA


CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAATTCCAAGTCATGATGACAGC
CACTGAAAACCAAGAATTTAATAATACAACTTGAACCAGGAGGCAGTTGA
CAAGTGGGTTATTACAAATAATAATATTTGGAACTATTGAATATTCATGT
CAGTAAGAACACAGTGTATATTTATGAGGAATTTGAATGTGAAGCCTATG
AGATCAACTGCCTGAAAACCAGAAGTTTTCAACTAGAGCCATTTGAGAAG
TAAAGTTCTGGACATTGACTTGATGGGAGAGACTGGGTTCTTTGAGACAT
CTAATAAGTGGAAGATTGAGGGATTGTCTTGCAATCTAACACAAATGTAC
TGGCTGTTTTTGTGTCAACGTAACACAGGCTGGAGTTATCACAGAGAAAG
GAGCTTCAGTTGAGGAAATGATTCCATAAGATCCAGCTATAAGGCATTTT
CTCAATTAGTGATCAAGGTGGGAGGGCCCCCTGTGGTAGTTGCCATCTCC
GGGCCTGTATATCTTGGCTTCTATATTAATCATGCTGTACTGTCTCGTAT
ATTTCTACATTTATTTCTCTCCTCCGGGTTTTGATTCAATCCCTGTTTCC
TGTCTGCTCTTATTCTCTGCCCTGATTTCCTTCACTATTCTTTCTATTAT
TATTCTCTCTTTTCTTCTCCCTTTACCTATCATATATCTCACTTACCTCC
CTGTTTCCTACTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_p11.b1 MSMg01no409_p11.b1 CHROMAT_FILE:
MSMg01no409_p11.b1 PHD_FILE: MSMg01no409_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:32 2005
         (466 letters)



>mm_chr1_51450214_51451079
          Length = 866

 Score =  862 bits (446), Expect = 0.0
 Identities = 458/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaagtgtttcactgaaaaaccatccacctggttgactgaatacagttagcaa 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaaagtgtttcaatgaaaaaccatccacctggttgactgaatacagttagcaa 264

                                                                       
Query: 65  tgttgttccgtggggtctccttgcttaatcttctgttttattttgtcacaggtactactg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttgttccgtggggtctccttgcttaatcttctgttttattttgtcacaggtactactg 324

                                                                       
Query: 125 agtaggatgcacactgttctcctttttcccttcccatgtcctgcacttcttcattgaccc 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 325 agtaggatgcacactgttctcctttttcccttcccgtgtcctgcacttcttcattgaccc 384

                                                                       
Query: 185 acagggtgattttcaatattggtttgcagcctagaattacttggagacatttgcttataa 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 acagggtgattttcaatattggtttgcagcctaaaattacttggagacatttgcttataa 444

                                                                       
Query: 245 actaatgcctagagtccagctgcagaaatttttgctaaagtggtttgggatatcccttgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actaatgcctagagtccagctgcagaaatttttgctaaagtggtttgggatatcccttgg 504

                                                                       
Query: 305 aaatcagtgtgttttctaaaacgttctgggagggtctaatacaaactctagactacaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatcagtgtgttttctaaaacgttctgggagggtctaatacaaactctagactacaaac 564

                                                                       
Query: 365 tactaagcttggtaatatagaaattccaggtaatctgtgaagtcctgtcaacgcatccag 424
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 tactaagcttggtaatatagaaattccaggtaacctgtgaagtcctgtcaacgcatccag 624

                                                     
Query: 425 gggcagagctattctgatagcgctgggtttcgtctccttgcc 466
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggcagagctattctgatagcgctgggtttcgtctccttgcc 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no409_p11.g1 MSMg01no409_p11.g1 CHROMAT_FILE:
MSMg01no409_p11.g1 PHD_FILE: MSMg01no409_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:32 2005
         (435 letters)



>mm_chr1_51631258_51632092
          Length = 835

 Score =  841 bits (435), Expect = 0.0
 Identities = 435/435 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaattccaagtcatgatgacagccactgaaaaccaagaatttaataatacaacttgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taaattccaagtcatgatgacagccactgaaaaccaagaatttaataatacaacttgaac 460

                                                                       
Query: 61  caggaggcagttgacaagtgggttattacaaataataatatttggaactattgaatattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caggaggcagttgacaagtgggttattacaaataataatatttggaactattgaatattc 400

                                                                       
Query: 121 atgtcagtaagaacacagtgtatatttatgaggaatttgaatgtgaagcctatgagatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgtcagtaagaacacagtgtatatttatgaggaatttgaatgtgaagcctatgagatca 340

                                                                       
Query: 181 actgcctgaaaaccagaagttttcaactagagccatttgagaagtaaagttctggacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 actgcctgaaaaccagaagttttcaactagagccatttgagaagtaaagttctggacatt 280

                                                                       
Query: 241 gacttgatgggagagactgggttctttgagacatctaataagtggaagattgagggattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gacttgatgggagagactgggttctttgagacatctaataagtggaagattgagggattg 220

                                                                       
Query: 301 tcttgcaatctaacacaaatgtactggctgtttttgtgtcaacgtaacacaggctggagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tcttgcaatctaacacaaatgtactggctgtttttgtgtcaacgtaacacaggctggagt 160

                                                                       
Query: 361 tatcacagagaaaggagcttcagttgaggaaatgattccataagatccagctataaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tatcacagagaaaggagcttcagttgaggaaatgattccataagatccagctataaggca 100

                          
Query: 421 ttttctcaattagtg 435
           |||||||||||||||
Sbjct: 99  ttttctcaattagtg 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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