BAC Information

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BAC

Clone NameMSMg01-410D19
Chromosome1 (Build37)
Map Location 108,499,867 - 108,639,491
singlet/doubletdoublet
Overlap geneBcl2, LOC100042085, Fvt1
Upstream genePign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075
Downstream geneVps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410D19.T7 (MSMg01no410_d19.b1)MSMg01-410D19.TJ (MSMg01no410_d19.g1)
ACCAG507532AG507533
length749765
length of high quality
(start - end)		559 (69 - 627)498 (77 - 574)
definitionCHROMAT_FILE: MSMg01no410_d19.b1 PHD_FILE: MSMg01no410_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:55 2005CHROMAT_FILE: MSMg01no410_d19.g1 PHD_FILE: MSMg01no410_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,499,867 - 108,500,425)(108,638,994 - 108,639,491)
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAAAAGGTTCACAGTGTACTTTTCACGTCTGCTGCAGGAGGGC
TGGGACAAGGTTTTATTTAAAAAACAACTCCTCCTTCCTGAAGGCCAAAA
GTAGGCACACGGACTCAGACAGAATTCCTCTCAAGATTTACTGCGGACAG
AGATCAGAGTTGAGTCTCTGCTTAGACACTGTATGTGAGGGCAAGTACAG
AAACATGACCATTCCATTGTATGGTTAAGGTCTTTATTGTGATTAAGAGA
GAGCAGAGGGAAAAAGAAGCAGACTGAACATGTATGTCCGGCATGCTGAG
CATGTCCAGAGCCATCTGTGAGAGAGGAGAGAATAGTGGGGAATAGAGAG
GACAGAGGTCATAGAGTATAGCAGGAGACAGAGAGAGCACGGAGACAATA
GTAAAAACATGGCTGTAGGAGGATGAATAGCTGCAGGGTGATTAGGGCAG
ATGAAGAGGTGAGAAGGAGAGATGCTGCTTCCAGGACTTTGAAATGTAGA
ACAAGTACCTGTGGGACTGTGAGTGCCTGGAAGCACAAATGCTTACNAGA
CAGGCAGTCACAGGTATATGCCAGTGGAGCCATGTGTCTCTTCTGCCAGA
GATAAGGGACTTGACTCCTTTTGGCAATTGGGAACTGGTTTCCCAAGTTC
CTGAGGAATGCTGGCTTTTATCTAACTGCTAGAATCCTCCTGTGTGCCA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGTTACTTAGAGTCACATAG
TCACTTGGTGACAGGAATAACAAGGCCTAGCCCTGTAACTGCAAGCTCCA
CTGGTCTTTTGCAGCAGAGGATGTATCTGTAATTTGGAATGTGCATGTGA
TGTGCATCTGGTAGCTGCTTTATCTGGTTTGGGATTTTGGGCTTAGAATC
CATTCGGGTGCAGAGTTTGAGAGATAAAAATGTATGCCCATTAAGGCCTT
TCCTGAAGTCTGACAGTATGATCCTCTTTTTAAGGGCAAAGTGTATCTCT
GGGAGCCCTGGTTTTCATTGCAGAGGGAACAGTGACCCAGTGGCTGCATC
AGAGTCGCTCAGCTTCTTGATGTCAAGAGTGATCTTTCACACTACCCAAA
GCTGACTGGGCTAAGTCGCCTTGACTTCTGAGCATTAAAATTGTTGTTAC
TTAAATAAACAAACACACATACCATCTAAAAGACTGCTATTTTATTTGGA
TTAAGTAAATTCAGACTTTTGAATCCCACTTGTTTGTAGCAAAATTTGCC
TCAAACCAAGATTTTCTTATCAACTAATAATTGTTTATTGAAATCTAGAT
AATTTGGGCAGTTTTTTATGAAGTAAACCAACCTAANTGGCTTAAAGCTT
GATGCTTTTGGGAAACCTTTTGGTTAAATATACCTTTTAAAGCTTTTTAA
GAAACAACCCCGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_d19.b1 MSMg01no410_d19.b1 CHROMAT_FILE:
MSMg01no410_d19.b1 PHD_FILE: MSMg01no410_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:55 2005
         (559 letters)



>mm_chr1_108499667_108500625
          Length = 959

 Score = 1029 bits (532), Expect = 0.0
 Identities = 552/559 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgtacttttcacgtctgctgcaggagggctgggacaaggttttatttaaaaaacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtacttttcacgtctgctgcaggagggctgggacaaggttttatttaaaaaacaac 260

                                                                       
Query: 61  tcctccttcctgaaggccaaaagtaggcacacggactcagacagaattcctctcaagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctccttcctgaaggccaaaagtaggcacacggactcagacagaattcctctcaagatt 320

                                                                       
Query: 121 tactgcggacagagatcagagttgagtctctgcttagacactgtatgtgagggcaagtac 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgcggacagagataagagttgagtctctgcttagacactgtatgtgagggcaagtac 380

                                                                       
Query: 181 agaaacatgaccattccattgtatggttaaggtctttattgtgattaagagagagcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaacatgaccattccattgtatggttaaggtctttattgtgattaagagagagcagag 440

                                                                       
Query: 241 ggaaaaagaagcagactgaacatgtatgtccggcatgctgagcatgtccagagccatctg 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ggaaaaagaagcagactgaacatgtatgtccggcatgctgagcttgtccagagccatctg 500

                                                                       
Query: 301 tgagagaggagagaatagtggggaatagagaggacagaggtcatagagtatagcaggaga 360
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tgagagaggagagaatagtgcggaatagagaggacagaggtcatagaggatagcaggaga 560

                                                                       
Query: 361 cagagagagcacggagacaatagtaaaaacatggctgtaggaggatgaatagctgcaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagagagagcacggagacaatagtaaaaacatggctgtaggaggatgaatagctgcaggg 620

                                                                       
Query: 421 tgattagggcagatgaagaggtgagaaggagagatgctgcttccaggactttgaaatgta 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 tgattagggcagatgaagaggtgagaaggagagatgctgctaccaggactttgaaatgta 680

                                                                       
Query: 481 gaacaagtacctgtgggactgtgagtgcctggaagcacaaatgcttacnagacaggcagt 540
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 gaacaagaacctgtgggactgtgagtgcctggaagcacaaatgcttacaagacaggcagt 740

                              
Query: 541 cacaggtatatgccagtgg 559
           |||||||||||||||||||
Sbjct: 741 cacaggtatatgccagtgg 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no410_d19.g1 MSMg01no410_d19.g1 CHROMAT_FILE:
MSMg01no410_d19.g1 PHD_FILE: MSMg01no410_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:55 2005
         (498 letters)



>mm_chr1_108638794_108639691
          Length = 898

 Score =  917 bits (474), Expect = 0.0
 Identities = 492/498 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgagttacttagagtcacatagtcacttggtgacaggaataacaaggcctagccctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 698 agtgagttacttagagtcacatagtcacttggtgacaggaataacaaggcctagccccgt 639

                                                                       
Query: 61  aactgcaagctccactggtcttttgcagcagaggatgtatctgtaatttggaatgtgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aactgcaagctccactggtcttttgcagcagaggatgtatctgtaatttggaatgtgcat 579

                                                                       
Query: 121 gtgatgtgcatctggtagctgctttatctggtttgggattttgggcttagaatccattcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gtgatgtgcatctggtagctgctttatctggtttgggattttgggcttagaatccattcg 519

                                                                       
Query: 181 ggtgcagagtttgagagataaaaatgtatgcccattaaggcctttcctgaagtctgacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggtgcagagtttgagagataaaaatgtatgcccattaaggcctttcctgaagtctgacag 459

                                                                       
Query: 241 tatgatcctctttttaagggcaaagtgtatctctgggagccctggttttcattgcagagg 300
           |||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tatgatccacaaattaagggcaaagtgtatctctgggagccctggttttcattgcagagg 399

                                                                       
Query: 301 gaacagtgacccagtggctgcatcagagtcgctcagcttcttgatgtcaagagtgatctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaacagtgacccagtggctgcatcagagtcgctcagcttcttgatgtcaagagtgatctt 339

                                                                       
Query: 361 tcacactacccaaagctgactgggctaagtcgccttgacttctgagcattaaaattgttg 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tcacactgcccaaagctgactgggctaagtcgccttgacttctgagcattaaaattgttg 279

                                                                       
Query: 421 ttacttaaataaacaaacacacataccatctaaaagactgctattttatttggattaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttacttaaataaacaaacacacataccatctaaaagactgctattttatttggattaagt 219

                             
Query: 481 aaattcagacttttgaat 498
           ||||||||||||||||||
Sbjct: 218 aaattcagacttttgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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