BAC Information

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BAC

Clone NameMSMg01-410F08
Chromosome1 (Build37)
Map Location 98,267,204 - 98,267,449
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410F08.T7 (MSMg01no410_f08.b1)MSMg01-410F08.TJ (MSMg01no410_f08.g1)
ACCAG507606AG507607
length730764
length of high quality
(start - end)
539 (54 - 592)334 (90 - 423)
definitionCHROMAT_FILE: MSMg01no410_f08.b1 PHD_FILE: MSMg01no410_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:02 2005CHROMAT_FILE: MSMg01no410_f08.g1 PHD_FILE: MSMg01no410_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATTGTTTCTCAGACTTAAATGCTGAGCAGTTGTCTG
AAGACACCGATCTCAGGTATTCAGGATTAGGGCTCCATACCTAGATCCAG
AGTTTGAGTTAGCATAGTCAGAGAAACCAGTATATATCTATATCTCTATC
TCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTC
TATCTCTATCTCTATCTCTATCTCTATCTCTATCATCTCTATCTCATCTA
TATTATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCT
ATATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTAT
ATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTATAT
CTATATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCT
ATATCATCTATATCTATATCTATATCTATATCTATATCTATATCTATCTA
TATATCTATATATCTATGTGTGTGTTTGTGTGTGTGTGTGTGTTTCCAGA
CAGGGTTTTTCTGTATAGGCCTGGCGGGCCTGGAACTCCCTTTGTAGACC
AGTCTGTCTCGTAATCATAATTCACCTGGCTCCGCCTCCTAGGGGGGGAT
TTAAGGGGTGTGTTTTCACTCCCTGGACTG
GAAAANAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTGCATTGC
TCAATAGCTTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCAA
TTCTTTTGTTCTTTTTCTTTTTTCTTTCTTATTCTTTCTTGTCCTTCCTT
CCTTTTTTTCTTTCTTGGTCTTTTTTTGTCTTTTTTCTTTGGTTGTTTCT
TTGTTTCTCTCTTTCTGTTGTTCTTTCTGTTCTTTCTTTGTTTCTTTCTT
TGTTTCTTTCTTTGTTTCTTTGCTTCTTTCTTTGCTTCTTTCTTTGCTTC
TTTCTTTCTTCCTTTCTTTCCTTCCTTCCTTCGCTCTTTCTATGAATAAA
ACACCCCTTGAAAATGATTTCCATCATCTTCTTTGCGAAATCACAAATAA
GCAGGCCTACCTGTTCCATAAGGCTTTACCCTTGCTAGAACTTTTTATCC
TCCCCCGAAAAATGGCCAAAAACTTACAATTCTATTCATCACCTTCAGCA
NACTTGCTGACTACATCTCATGTTTCCCCCGTCGCACACCCTCTTTCACC
TCCCTCATTTCTATCCCGCTCCTTCCTTCCTATAAACACTTCCTTTATAT
CCTCTTCTTACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_f08.b1 MSMg01no410_f08.b1 CHROMAT_FILE:
MSMg01no410_f08.b1 PHD_FILE: MSMg01no410_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:02 2005
         (539 letters)



>mm_chr1_98267000_98267938
          Length = 939

 Score =  315 bits (163), Expect = 4e-90
 Identities = 229/253 (90%), Gaps = 7/253 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattgtttctcagacttaaatgctgagcagttgtctgaagacaccgatctcagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattgtttctcagacttaaatgctgagcagttgtctgaagacaccgatctcagg 264

                                                                       
Query: 65  tattcaggattagggctccatacctagatccagagtttgagttagcatagtcagagaaac 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattcatgattagggctccatacctagatccagagtttgagttagcatagtcagagaaac 324

                                                                       
Query: 125 cagtatatatctatatctctatctctatctctatctctatctctatctctatctctatct 184
           |||||||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 325 cagtatatatctatatctatatctatatctatatctatatctatatctatatctatatct 384

                                                                       
Query: 185 ctatctctatctctatctctatctctatctctatctctatctctatcatctctatctcat 244
            ||||| ||||| ||||| ||||| ||||| |||||  |||| ||| || | |||   ||
Sbjct: 385 atatctatatctatatctatatctatatctatatct--atctatat-atttatat---at 438

                        
Query: 245 ctatattatctat 257
           |||||| ||||||
Sbjct: 439 ctatat-atctat 450



 Score =  250 bits (129), Expect = 2e-70
 Identities = 145/153 (94%), Gaps = 7/153 (4%)
 Strand = Plus / Plus

                                                                       
Query: 387 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                       
Query: 447 tatatcatctatatctatatctatatctatatctatatctatatctatctatatatctat 506
           ||||||   |||||||||||||||||||||||||||  ||||||  || |||||||||||
Sbjct: 390 tatatc---tatatctatatctatatctatatctat--ctatat--atttatatatctat 442

                                            
Query: 507 atatctatgtgtgtgtttgtgtgtgtgtgtgtg 539
           |||||||||||||||||||||||||||||||||
Sbjct: 443 atatctatgtgtgtgtttgtgtgtgtgtgtgtg 475



 Score =  194 bits (100), Expect = 2e-53
 Identities = 116/122 (95%), Gaps = 3/122 (2%)
 Strand = Plus / Plus

                                                                       
Query: 339 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                       
Query: 399 tatatctatatctatatctatatctatatctatatctatatctatat--ctatatcatct 456
           ||||||||||||||||||||||||||||||||| | ||||| |||||  |||||| ||||
Sbjct: 390 tatatctatatctatatctatatctatatctatctatatatttatatatctatat-atct 448

             
Query: 457 at 458
           ||
Sbjct: 449 at 450



 Score =  194 bits (100), Expect = 2e-53
 Identities = 112/116 (96%), Gaps = 1/116 (0%)
 Strand = Plus / Plus

                                                                       
Query: 345 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                   
Query: 405 tatatctatatctatatctatatctatatctatatctatatctatatcatctatat 460
           ||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||
Sbjct: 390 tatatctatatctatatctatatctatatctatctatatatttatat-atctatat 444



 Score =  192 bits (99), Expect = 7e-53
 Identities = 113/119 (94%), Gaps = 4/119 (3%)
 Strand = Plus / Plus

                                                                       
Query: 255 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                      
Query: 315 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatat 373
           |||||||||||||||||||||||||||||||||  |||||| | |||  ||||||||||
Sbjct: 390 tatatctatatctatatctatatctatatctat--ctatatatttat--atatctatat 444



 Score =  192 bits (99), Expect = 7e-53
 Identities = 113/119 (94%), Gaps = 4/119 (3%)
 Strand = Plus / Plus

                                                                       
Query: 267 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                      
Query: 327 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatat 385
           |||||||||||||||||||||||||||||||||  |||||| | |||  ||||||||||
Sbjct: 390 tatatctatatctatatctatatctatatctat--ctatatatttat--atatctatat 444



 Score =  192 bits (99), Expect = 7e-53
 Identities = 113/119 (94%), Gaps = 4/119 (3%)
 Strand = Plus / Plus

                                                                       
Query: 279 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                      
Query: 339 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatat 397
           |||||||||||||||||||||||||||||||||  |||||| | |||  ||||||||||
Sbjct: 390 tatatctatatctatatctatatctatatctat--ctatatatttat--atatctatat 444



 Score =  192 bits (99), Expect = 7e-53
 Identities = 113/119 (94%), Gaps = 4/119 (3%)
 Strand = Plus / Plus

                                                                       
Query: 291 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                      
Query: 351 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatat 409
           |||||||||||||||||||||||||||||||||  |||||| | |||  ||||||||||
Sbjct: 390 tatatctatatctatatctatatctatatctat--ctatatatttat--atatctatat 444



 Score =  192 bits (99), Expect = 7e-53
 Identities = 113/119 (94%), Gaps = 4/119 (3%)
 Strand = Plus / Plus

                                                                       
Query: 303 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                      
Query: 363 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatat 421
           |||||||||||||||||||||||||||||||||  |||||| | |||  ||||||||||
Sbjct: 390 tatatctatatctatatctatatctatatctat--ctatatatttat--atatctatat 444



 Score =  192 bits (99), Expect = 7e-53
 Identities = 113/119 (94%), Gaps = 4/119 (3%)
 Strand = Plus / Plus

                                                                       
Query: 315 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                      
Query: 375 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatat 433
           |||||||||||||||||||||||||||||||||  |||||| | |||  ||||||||||
Sbjct: 390 tatatctatatctatatctatatctatatctat--ctatatatttat--atatctatat 444



 Score =  192 bits (99), Expect = 7e-53
 Identities = 113/119 (94%), Gaps = 4/119 (3%)
 Strand = Plus / Plus

                                                                       
Query: 327 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatatc 389

                                                                      
Query: 387 tatatctatatctatatctatatctatatctatatctatatctatatctatatctatat 445
           |||||||||||||||||||||||||||||||||  |||||| | |||  ||||||||||
Sbjct: 390 tatatctatatctatatctatatctatatctat--ctatatatttat--atatctatat 444



 Score = 97.4 bits (50), Expect = 2e-24
 Identities = 59/62 (95%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                       
Query: 447 tatatcatctatatctatatctatatctatatctatatctatatctatctatatatctat 506
           ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 328 tatat-atctatatctatatctatatctatatctatatctatatctatatctatatctat 386

             
Query: 507 at 508
           ||
Sbjct: 387 at 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 257
Number of extensions: 55
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 17
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)