BAC Information

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BAC

Clone NameMSMg01-410H09
Chromosome1 (Build37)
Map Location 193,457,414 - 193,457,657
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7
Downstream geneLpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410H09.T7 (MSMg01no410_h09.b1)MSMg01-410H09.TJ (MSMg01no410_h09.g1)
ACCAG507704AG507705
length7741,027
length of high quality
(start - end)
244 (74 - 317)---
definitionCHROMAT_FILE: MSMg01no410_h09.b1 PHD_FILE: MSMg01no410_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:12 2005CHROMAT_FILE: MSMg01no410_h09.g1 PHD_FILE: MSMg01no410_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCCTATTCCAGGAGAGTCAAAGGAAAGAAAAGTCAAGGAT
TTTTTTTCTTGGTAAAGCTTGTGGGAAAACACTTTTCTGTCAAGTAGCTG
TATGAATTTGACCACAGAGAGCTGCTGCTCGAGACTCTGGAAGGAAAAGG
CACTCAGTACTCAGAGAAAAGGAGTAAGCTGGTGAGCTGGGTGTGGTGGC
TCGCTCGCTTCTGTAAATCCCAGTACTCAGCAGGCTGAGCTGGGAGAACT
GCTGTCAACTGGAGGTCATCCTATTATTGCAGTGAGACACTGTCTTAACC
GGAAAGGAAATAGAAGAGAAAAAGAAACAAAACTTTAGAAAGAGGCAAAT
GTGGGCACAAGGGGAGATCTTTTGTCATGCCAGCTTCCTTATCCTGACTG
TCCTGTGATTTTTTTTCCCCACCAACCCTTCATTCTCTGAGCTCCCAGAA
ATTCCTAGAAGTCAAGTCTGTCTGTCCATCTGTCTCTCTTTCTCCCTACT
ATAATTTCTACCTACCTAGAGTTCTGCCTACTCACATGGTCTGTCTCCTC
GATGAACTCCTCTGCCTGTTCCTGTTCCTCCTTCTTATTCCCGCCCCCCT
TTTTTCCTTAATTCGCCTCTACCTCCCTCTACCTTTCGTTTCCCCTTATC
TATCCTTCCCTCCCTAACCCATTTACTTTCTCCCCGCCCCTCTTCATCTC
CTCTTTTACCTCCCTCTTTCCCTG
CTACCGATTGATAATGGTGTTAGGCCCTGAGCGAGCCGCCTGTTTCTCCC
AACATTTAGGGTGACACTTATACGAATTTTCCCGCCGAAAACTCCTTTGA
GTCCAAAGTCCTGGCATGGATAGCCTGTCAGGGCTTGTGGCTTCATTTTA
ACGGAACCCTTACGGTGGCGGTACCCTCAACCCTTTGGCACATACTACGC
ACGCCAGTCCTGGAACTCCTTTGGGCCTCTTCGACCACCTGCCTATGTGT
TTTCTCNCGTCACCCTTGGAAAGCTTTGCGGTGGCCAGTATACCACCATC
CCCTCACAGTACTTAACAAGCGTCGCCCCCTCTCGAATATGTCACTTTAC
GATCATCTATCGGTTCCTCGCCCTTCCTGTCTTCCCACTCCTGACCCATC
TCTTGTTTTTTGGTCATCCTGCTCCTCACTCTTCTCTATCTGCCCATCCT
TCACCTGCTGTCTTCTCATGTTGCTATAACCTTTGATTCCTTTCCATCTT
CCGTGTCACTACTCCTCTTCCCTTCTTCTCTTTCATTTTACCTCTCTCTC
CTCTTTTCGCCCGTTTCTCACCATTCCCTTTTTTTTCTCTTTTCCGCCTT
TACTCTCTCCATTCATCCTCCCCTTATTATACCCCCTTTTCCTCCTTACC
TTTTCTCTTCGCTTTTTGTCTCCCGTACCTTATTTTCCTTTCTTTTCCTC
TTTTACCTACCTCTTTTCCCCTTCCCACCCATCCTTTTCCCGTCTCTTTC
CCTTTCCCTCCCTCTCCCTTTTTTCCCCTTCCTCTCCCACCTCTTTCTTA
TTCCCCCCTCCTCTTCCTCTTTTCTCATTCCGTCTTTCTCCACCCTACTC
TCTTCCCTTCTCTTCTTTTCCTATCTTCCTTACCCCTTCCTCTTTCCTCC
TTTTATCGCCTACTCTCTCGCTTATTCCGTTCCATATCCCTCTCGTTTTC
TTTTCCTCCGCCCTCTTTGCTCCGCCCTTTATTCTCCCCTTCCCTTCCTC
TTTTCTCTCCCTCCACCTTATCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_h09.b1 MSMg01no410_h09.b1 CHROMAT_FILE:
MSMg01no410_h09.b1 PHD_FILE: MSMg01no410_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:12 2005
         (244 letters)



>mm_chr1_193457297_193457940
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtcaaaggaaagaaaagtcaaggattttttttcttggtaaagcttgtgggaaaacact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagtcaaaggaaagaaaagtcaaggattttttttcttggtaaagcttgtgggaaaacact 302

                                                                       
Query: 61  tttctgtcaagtagctgtatgaatttgaccacagagagctgctgctcgagactctggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttctgtcaagtagctgtatgaatttgaccacagagagctgctgctcgagactctggaag 242

                                                                       
Query: 121 gaaaaggcactcagtactcagagaaaaggagtaagctggtgagctgggtgtggtggctcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaaggcactcagtactcagagaaaaggagtaagctggtgagctgggtgtggtggctcg 182

                                                                       
Query: 181 ctcgcttctgtaaatcccagtactcagcaggctgagctgggagaactgctgtcaactgga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 181 ctcgcttctgtaaatcccagtactcagcaggctgagctgggagaactgctgtcaaccgga 122

               
Query: 241 ggtc 244
           ||||
Sbjct: 121 ggtc 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)