NNNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTCTAATTCGTATCCCTTTGATCTCCTTTGGTTGTCT
AGTTGCAATGGCTAGGACTTCAAGTACTACATAAAATAGAGAGGGAGATT
GTGGGCAGCCTTGTCTGGTCCCTGATTTTAGTGGGACTACTTCAAGATTC
TCTCCATTTAGTTTGATTTGACTACTGGTTTGCTGTATATTGCTTTTACT
ATGTTTAGGTATGTTTACTATGTTTGGGCTTTGAATTCCTGACCTTTCCA
AGACTTATTGTGAATGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCACT
TAATGAGATGATCATATGCCTTTTTTCTTTGGGCTTGTAGTGTCTGTCTT
GGTCACTGAAGTGGGTTTCCTGTATACAGCAAAATGTTGGGTCGTGTTTA
TGTAATCAGTCTGTAACCCTATGCCTTTGTTTTGAGGAATTGAATCCCCT
GACATTAAGAGATATTACGGTCATTTCTTGCTGCCTCCCGCTATTTTCGT
TGCTCCAATTGTATTCGGTTCCTGGCCTCTCTCTCTTTTTCGCTCTCTCC
TTCATCCCCCTGTATCTACCTTTGTATTCTCGTTCTTTTCCCCTCTCCCT
TTTTCTTTTTTCCCCTCCCCTCCGCTCCCTTCTTCCCTTTTCTCCTTCCT
CCTTCCCCCTTTTTTTCCCCCCCCTGTCCCTTTTCTCCTTTTTTN

NNNTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAATAACCCAATAAGC
CATCAACTAGGACACAGGGTTCAGTGGTAGATCATTTGCACAAAGCCTTG
ATTTCTGTGAACAGCAATGAAAAAAAAAAAAAAAAGGAGAACCAGTATCG
AGTCAAGTGTATTACTATTTCCATATAACAGTTAAGGAGACAGAATTAGA
GAAACTAAACCAGCATGGTGTGCTCCCACAGTGAGCAAACCTAGACCTTT
ACATATGGCAGAAGATGTTATTTTTTAATAATTACCAGTTTATATAATTA
TTTTGCTTAACATATTCAAATATTATAAGTAGTTCTACCTTGATTATCCT
GAGCTCTTATAACTGTATTTTTATAAAGCCAAGTGCTCTTTAAGATACAG
CAAGAATCTGATCTCGGCTGGGAAGTATTTGAATGTACTGATGTCTCTGT
ATCAATGAAAAAGATTTCCTGAATGATTGGTTTATGCCAGATACTGTATT
TTTTATTGTCCCTGGNGCTGGCCACAACTTTATAAAACAGTTCTGCCAGA
CAAAATATATGACTTTCGTGAATACAAATGCATTGCTTCAACTAATAAAC
CTAAATGGGTGCCCAAGTTAAAAAGGAGAATGAAGGATTATTGTGGGAAT
GTTTCCCAAAAAATCCCCCCTCAAAAATTCTTTGTTGGGGGCCTCCCGGG
AAAAA

Query= MSMg01no410_p03.g1 MSMg01no410_p03.g1 CHROMAT_FILE:
MSMg01no410_p03.g1 PHD_FILE: MSMg01no410_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:50 2005
         (461 letters)



>mm_chr1_32740844_32741708
          Length = 865

 Score =  810 bits (419), Expect = 0.0
 Identities = 454/467 (97%), Gaps = 8/467 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttataataacccaataagccatcaactaggacacagggttcagtggtagatcatttgca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttataataacccaataaggcatcaactaggacacagggttcagtggtagatcatttgca 260

                                                                       
Query: 61  caaagccttgatttctgtgaacagcaatgaaaaaaaaaaaaaaaaggagaaccagtatc- 119
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | 
Sbjct: 261 caaagccttgatttctgtgaatagcaatgaaaaaaaaaaaaaaaaggagaaccagta-ct 319

                                                                       
Query: 120 gagtcaagtgtattactatttccatataacagttaaggagacagaattagagaaactaaa 179
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gagtcaagtgttttactatttccatataacagttaaggagacagaattagagaaactaaa 379

                                                                       
Query: 180 ccagcatggtgtgctcccacagtgagcaaa-cctagacctttacatatggcagaagatgt 238
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 380 ccagcatggtgtgctcccacagtga-caaaacctagacctttacatatggcagaagatgt 438

                                                                       
Query: 239 tattttttaataattaccagttt--ata--taattattttgcttaacatattcaaatatt 294
           |||||||||||||||||||||||  |||  ||||||||||||||||||||| ||||||||
Sbjct: 439 tattttttaataattaccagtttgtataattaattattttgcttaacatatacaaatatt 498

                                                                       
Query: 295 ataagtagttctaccttgattatcctgagctcttataactgtatttttataaagccaagt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ataagtagttctaccttgattatcctgagctcttataactgtatttttataaagccaagt 558

                                                                       
Query: 355 gctctttaagatacagcaagaatctgatctcggctgggaagtatttgaatgtactgatgt 414
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 559 gctctttaagatacagcaagaatctgatctcagctgggaagtatttgaatgtactgatgt 618

                                                          
Query: 415 ctctgtatcaatgaaaaagatttcctgaatgattggtttatgccaga 461
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctctgtatcaatgaaaaagatttcctgaatgattggtttatgccaga 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 865
Length adjustment: 10
Effective length of query: 451
Effective length of database: 855
Effective search space:   385605
Effective search space used:   385605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)