Query= MSMg01no410_p17.b1 MSMg01no410_p17.b1 CHROMAT_FILE:
MSMg01no410_p17.b1 PHD_FILE: MSMg01no410_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:53 2005
(285 letters)
>mm_chr1_77166692_77167376
Length = 685
Score = 478 bits (247), Expect = e-139
Identities = 271/279 (97%)
Strand = Plus / Minus
Query: 5 ggaattccacaagatttgctcactatataatggcaacatatatgcagaggacctaggtca 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggaattccacaagaatagctcactatataatggcaacatatatgcagaggacctaggtca 552
Query: 65 gacctgtacaggctccatggttgctgtttcagtctctgagagcccctatggccccaggtt 124
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 551 gaactgtacaggctccatggttgctgcttcagtctctgagagcctctatggccccaggtt 492
Query: 125 agttgattctgtggacagcgttcttgtggtaaacattgatctctttataatgatatcctg 184
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 491 agttgattctctggacagcgttcttgtgggaaacattgatctctttataatgatatcctg 432
Query: 185 aaaatactttttacatcttgtatctcccatttgttttcctcacactgtatagggaatatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaaatactttttacatcttgtatctcccatttgttttcctcacactgtatagggaatatt 372
Query: 245 cacagcgagatacaggggtttttgtttgtttgtttgttt 283
||||||||||||||||| |||||||||||||||||||||
Sbjct: 371 cacagcgagatacagggttttttgtttgtttgtttgttt 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no410_p17.g1 MSMg01no410_p17.g1 CHROMAT_FILE:
MSMg01no410_p17.g1 PHD_FILE: MSMg01no410_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:53 2005
(564 letters)
>mm_chr1_76931999_76932968
Length = 970
Score = 965 bits (499), Expect = 0.0
Identities = 552/577 (95%), Gaps = 13/577 (2%)
Strand = Plus / Plus
Query: 1 ttggatgttgtcactagcaactcatgagacaaataattgacatccctgaatacctaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttggatgttgtcactagcaactcatgagacaaataattgacatccctgaatacctaaggt 253
Query: 61 attcaggaagcatttataaaagtgaaaagaatgacctcggctacct-------aaaaaga 113
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 254 attcaggaagcatttataaaagtgagaagaatgacctcggctacctaaaaaaaaaaaaaa 313
Query: 114 aaagtgcttctgggcagatgaggtagtgaatctctacatcatgactacagcaagacccac 173
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 314 aaagtgtttctgggcagatgaggtagtgaatgtctacatcatgactacagcaagacccac 373
Query: 174 atctcagtgcaaagggagctagagatctaaactctggagagagggatgtgctgctgagac 233
||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 374 atctcagtgcaaaggcagctggagatctaaactctggagagagggatgtgctactgagac 433
Query: 234 ctgctgtcctgtgtggatgtggtccagtcacctcagtaagactagttattcatgttcatt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctgctgtcctgtgtggatgtggtccagtcacctcagtaagactagttattcatgttcatt 493
Query: 294 ctcaagggaaagcatgaagctacaagatctacttgtgacattgttcacagagatgtgaag 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctcaagggaaagcatgaagctacaagatctacttgtgacattgttcacagagatgtgaag 553
Query: 354 cttacagtctgtaactcattcaactattaatcctgtcctgttttgctccatatgtgtgtt 413
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 554 cttacagtctgtaactcattcaactattaatcctgtcctgttttgctccacatgtgtgtt 613
Query: 414 aagtatacaaactaatagaatgatattttcatatatgcatat------tacaacattttc 467
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 614 aagtatacaaactaatagaatgatattttcatatatgcatatgcatattacaacattttc 673
Query: 468 atatatacatataaagtcttttgctctatcaccattgcctcttctccctcttccactcaa 527
|||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 674 atatatccatataaagtcttttgctccatcaccattgcctcttctcccttttccactcaa 733
Query: 528 gtcctcctgttcagttattccccttctgtatccatgg 564
|||||||||||||||||||||||||||| ||||||||
Sbjct: 734 gtcctcctgttcagttattccccttctgcatccatgg 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 970
Length adjustment: 10
Effective length of query: 554
Effective length of database: 960
Effective search space: 531840
Effective search space used: 531840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
