BAC Information

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BAC

Clone NameMSMg01-411A08
Chromosome1 (Build37)
Map Location 88,340,616 - 88,341,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik
Downstream geneLOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411A08.T7 (MSMg01no411_a08.b1)MSMg01-411A08.TJ (MSMg01no411_a08.g1)
ACCAG508132AG508133
length838741
length of high quality
(start - end)
142 (77 - 218)473 (77 - 549)
definitionCHROMAT_FILE: MSMg01no411_a08.b1 PHD_FILE: MSMg01no411_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:56 2005CHROMAT_FILE: MSMg01no411_a08.g1 PHD_FILE: MSMg01no411_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGATGTTTCCGTCTCCCAAGGGCTGGGATAGAGATGTGCAA
ATCACCCACATCTGGTTTATTCTTAAGAAAAAAATTAGAGCTGGGCGTGG
CGATGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTT
CTGAGTTCAAGGCCAGTCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG
GCTATACTGAGAAACCCCTGTCTCGAAAAACCCTNNNAAGAAAGGAAGAA
AGATGGANNNNNNNNNNNNNCTAAAAAAAAGAGNNAAAACGTTNCCGGTN
NNAAAAAAACNNCTTCGCGAGGGCACCGGGGGNNNCCTGGGGCCAGGNNN
NNNNNNNNNTCNNNNTNNGNNNNNNNNNTGNNNNNNNNNNNNNNNNNNNN
NNNNNAAAATGGGAGGGGGGGGGGGGGAGGGGGCGGGGGGNNNNNNNNNN
NNNNNNNNNNNCNNNNCNNNCCNCTGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCCCCCCCNCCNNNNCCCCCNNNNCCGGCCCCC
CTGGNNNNNNNNNNNNNNNNNNNNCCNCCCCCCCAAACACCNNCCTTCNN
NNCCNNNCCNNNNCCNNNNNNNCNCCCCNCCNCCCCCCNCNNCCNCCCNN
CNCCCCCCCCCCCCNCNNCNNNNNNCCCCCCNNNNCCCNNCCCNNCCCNC
NNNNNNCCCCCCNCCCCNCCCCNNCNCCCCCCCCCCNCCNNCCCCCCCCC
CCCCCCCCNCCCCNCNCCCCNACCCACCCCCACAGCGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCTGCCTGGGCTACAGAATG
GGGCCCTATCACAAACCCGAAACCAACAAATAACAAAATCTTCACCCGAG
GAGATGAGGTGTGTTGGAACAGGACGCCATCGGTACCAGGCTTCATCTCA
CAGACCAAGCCTAGTTAGTTTGCCTCCTATAGGAATCAGGCATAGGCCCT
TCTTTTCCCACTATGACGGCCTCTAGGCAGAACAGGAAGAAACCACTCAG
GAGCAGGGTGCTGGAGGATTTATGCAACTAGATGCCATAGTTGAGAGAAA
ACTGGTTTGGAGCTTGCTTGCAACTTCCCTCAGCCCAGTGTTCTAGGTGT
GTCTAAGAAGGCCCTGCTTGTCCAGTTCCTGTGAGGAGGTGTCACTGGAT
GAGGACAGCGGTGGGGACAGGGGTGGGGACTGACCTCAGGCAGCTCCTAT
CTAGGTTCAGGTTCCCTTTAGGGCATGGGCTGGCCTGAACCGGGGACCTC
TCTTCAGTCTCACAAAGGAAAGGATGTGAGAGTTAGCCTGTGGGCAGCAG
GGAATCCCGCTGTGTGGGAAGGAGGTTTTCTCATCTTCTGATGACGCCGC
CTGTGTTTTTTTTTTTCACCATCCCCTATCCTTTTACTTTTCCCATCGCC
ACTCCCGCTTTTATTATTTCTTCATTCCGCCCTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_a08.g1 MSMg01no411_a08.g1 CHROMAT_FILE:
MSMg01no411_a08.g1 PHD_FILE: MSMg01no411_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:56 2005
         (473 letters)



>mm_chr1_88340416_88341288
          Length = 873

 Score =  847 bits (438), Expect = 0.0
 Identities = 465/474 (98%), Gaps = 2/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacctgcctgggctacagaatggggccctatcacaaacccgaaaccaacaaataacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aagacctgcctgggctacagaatggggccctatcacaaacccgaaaccaacaaataacaa 614

                                                                       
Query: 61  aatcttcacccgaggagatgag-gtgtgttggaacaggacgccatcggtaccaggcttca 119
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 613 aatcttcacccgaggagatgagag-gtgttggaacaggacgccatcggtaccaggcttca 555

                                                                       
Query: 120 tctcacagaccaagcctagttagtttgcctcctataggaatcaggcataggcccttcttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctcacagaccaagcctagttagtttgcctcctataggaatcaggcataggcccttcttt 495

                                                                       
Query: 180 tcccactatgacggcctctaggcagaacaggaagaaaccactcaggagcagggtgctgga 239
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 494 tctcactatgacggcctctaggcagaacaggaagaaaccacccaggagcagggtgctgga 435

                                                                       
Query: 240 ggatttatgcaactagatgccatagttgagagaaaactggtttggagcttgcttgcaact 299
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggaagcatgcaactagatgccatagttgagagaaaactggtttggagcttgcttgcaact 375

                                                                       
Query: 300 tccctcagcccagtgttctaggtgtgtctaagaaggccctgcttgtccagttcctgtgag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tccctcagcccagtgttctaggtgtgtctaagaaggccctgcttgtccagttcctgtgag 315

                                                                       
Query: 360 gaggtgtcactggatgaggacagcggtggggacaggggtggggactgacctcaggcagct 419
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 314 gaggtgtcactggatgaggacagcggtggggacaggggtgggaactgacctcgggcagct 255

                                                                 
Query: 420 cctatctaggttcaggttccctttagggcatgggctggcctgaaccggggacct 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cctatctaggttcaggttccctttagggcatgggctggcctgaaccggggacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)