Query= MSMg01no411_a22.b1 MSMg01no411_a22.b1 CHROMAT_FILE:
MSMg01no411_a22.b1 PHD_FILE: MSMg01no411_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:59 2005
(482 letters)
>mm_chr1_64199561_64200442
Length = 882
Score = 837 bits (433), Expect = 0.0
Identities = 460/469 (98%)
Strand = Plus / Minus
Query: 1 tccatgggacgatggtttctacagggtggacaagaggtattgtgaatacagaatgcttgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 669 tccatgggacgatggtttctacagggtggacaagaggtattgtgaatacagaatgcttct 610
Query: 61 gcaatagttttagacgtggccagaaggaaatccaataaacaaccttccacatcccattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gcaatagttttagacgtggccagaaggaaatccaataaacaaccttccacatcccattgt 550
Query: 121 gtggagttgggaatgcccaaaggtctgtaactggtctgcagggctgagaaagtatgaggt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtggagttgggaatgcccaaaggtctgtaactggtctgcagggctgagaaagtatgaggc 490
Query: 181 acatgccattagcaaggctaaaagctgagggccatgagcagagggccagtgaaagctaga 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 489 acatgccattagcaaggctaaaagctgagggccgtgagcagagggccagtgaaagctaga 430
Query: 241 tagttgcatggaaatctgaagttcaagccctggagagaccaaatcccgatcattactaag 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tagttgcagggaaatctgaagttcaagccctggagagaccaaatcccgatcattactaag 370
Query: 301 gtcagagtgcaaaggccacacaggtgactttgggagtgagagaggtagaggttagcaaca 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtcagaatgcaaaggccacacaggtgactttgggagtgagagaggtagaggttagcaaca 310
Query: 361 aagatcacctaggatcttgtggcttctcttgtcagtgatggcatatatgtaatatgagag 420
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 309 aagatcacctaggatcttgtggcttctgttgtcagtgatggcatatatgtagtatgagag 250
Query: 421 agtctacctcaccatccccaaagcagtgacagagaactcattgacaggg 469
|||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 249 agtcaacctcaccatccccaaagcagtgacagagaactcagtgacaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_a22.g1 MSMg01no411_a22.g1 CHROMAT_FILE:
MSMg01no411_a22.g1 PHD_FILE: MSMg01no411_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:59 2005
(521 letters)
>mm_chr1_64020864_64021784
Length = 921
Score = 980 bits (507), Expect = 0.0
Identities = 519/525 (98%), Gaps = 4/525 (0%)
Strand = Plus / Plus
Query: 1 atatttttttctcaaaatatacaactgaatcaacaga----aagagctctgaaaacacgc 56
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 197 atatttttttctcaaaatatacaactgaatcaacagagagaaagagctctgaaaacacgc 256
Query: 57 attagttttatttgacaacgctcaaatttataattttaaaaataacttctatgaagtccc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 attagttttatttgacaacgctcaaatttataattttaaaaataacttctatgaagtccc 316
Query: 117 aatgaaaagatgactaaattttgaaatagatttaaagcatatatttcatgaaaggagatg 176
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 317 aatgaaaagatgactaaattttgaaatagatttaaagcagatatttcatgaaaggagatg 376
Query: 177 gtgaatggtagccaacaagaatgtggaacgaggttaatatccttagctgtgagttaaagg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgaatggtagccaacaagaatgtggaacgaggttaatatccttagctgtgagttaaagg 436
Query: 237 ctctaaggaaatgttcagtacactggaaatgctctcagtctggactagggtgtcatctac 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctctaaggaaatgttcagtacactggaaatgctctcagtctggactagggtgtcatctac 496
Query: 297 atgagtgaacaatctaacaaaatttgtcacacttccttttaaaacttagatctcactgtg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atgagtgaacaatctaacaaaatttgtcacacttccttttaaaacttagatctcactgtg 556
Query: 357 ggtatattttacaaaactttaaacatgttcgcacaacctatcttttccttgctgacttgt 416
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 557 ggtatattttacaaaactttaaacatgttcacacaacctatcttttccttgctgacttgt 616
Query: 417 tgctatctggatgtttgctcttgagagtcaagttgttgatcatttggtcatctgttttgt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgctatctggatgtttgctcttgagagtcaagttgttgatcatttggtcatctgttttgt 676
Query: 477 cttccgcccacttttgcattcatcgctgaatacagtgctttggat 521
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cttccgcccacttttgcattcatcgctgaatacagtgctttggat 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
