BAC Information

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BAC

Clone NameMSMg01-411D11
Chromosome1 (Build37)
Map Location 10,889,114 - 10,889,631
singlet/doubletsinglet
Overlap genenone
Upstream geneSgk3, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411D11.T7 (MSMg01no411_d11.b1)MSMg01-411D11.TJ (MSMg01no411_d11.g1)
ACCAG508281AG508282
length739739
length of high quality
(start - end)
520 (49 - 568)499 (76 - 574)
definitionCHROMAT_FILE: MSMg01no411_d11.b1 PHD_FILE: MSMg01no411_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:11 2005CHROMAT_FILE: MSMg01no411_d11.g1 PHD_FILE: MSMg01no411_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTTCTCCCACTGCATGTATTTGCCCTACAATGTTGTCTTT
CTGTTCTGAAAGAAAGTTCCACTGTGTGCTAGCAGCAGCAGGAGCAGTGG
AAATCTGTCCTAATAAAAGAACTGGGTATTTAGGAAGCTGCTTTGCTGTT
AGGGGAAGCTGATAGGAATTGGGCTAGAGTTCCCTCATGTGCAGTTAGAG
CTAAGATTAGGCTGTATGGACCAAACTAGCCTAAATCCCTGTGGCTCACA
CAGTACAGGTTTGTATTTTTCTTGCATCAAATGCTTACCATGAGTCTGTG
TGGCTGTCAGTTGGTGGGATGAGGATCCTTCACTGTGACATGTGTGTAAT
CTGCATTCGCAAGACAAGGAATGGCATAATTGTTGTAGCTCCTACTGAAG
TTTTGTAAAATCTCAAGCTAGAAAAGGTCCAAAAGTCATAAGAAATATGG
ACTTATAGGCATCTATTTTCTACAAGCACAGAACTAGTGACAGAATGGAA
TGCCCCAAAGGGTGCCCACAGTGGGCTGTGGACCAAGTTATCAGTGCCCA
GTGGTGACACTGGTCAAAAATTCACCCTGGTCTCAGAATGACTCACCAAG
ATGGAATTTTCCTAAAGCTGACTTTTGCCAAACCAGACATTTTTTCGTTT
CTCAAACAAACAGACCTTGATAACTTAGCTATGTTCTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGGTTTTGGTATCAGAGTAATAGT
GGCTTCATAAAATGAGTTGGGTAGAGTACTTTCTACTTCTATCTTGTGAA
AAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATT
TATAACTGCTTCTATTTCTTTAGGGGATATGGCACTGTTTACAAGGTCCA
CTTTGATCCTGATTCTACTTTGGTACCTGGTATCCGTCCCTACATTTGTT
TATCTTCTTCAGCTCCTTCCGTTTCCGTTGACCATACTCTTATGCTAAAT
TTCCTGTATTTTGCCTTCCTTTTCTTTTCCTCTTTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_d11.b1 MSMg01no411_d11.b1 CHROMAT_FILE:
MSMg01no411_d11.b1 PHD_FILE: MSMg01no411_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:11 2005
         (520 letters)



>mm_chr1_10888911_10889831
          Length = 921

 Score =  963 bits (498), Expect = 0.0
 Identities = 513/518 (99%), Gaps = 1/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttctc-ccactgcatgtatttgccctacaatgttgtctttctgttctgaa 62
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggaattcactttctcagcactgcatgtatttgccctacaatgttgtctttctgttctgaa 662

                                                                       
Query: 63  agaaagttccactgtgtgctagcagcagcaggagcagtggaaatctgtcctaataaaaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agaaagttccactgtgtgctagcagcagcaggagcagtggaaatctgtcctaataaaaga 602

                                                                       
Query: 123 actgggtatttaggaagctgctttgctgttaggggaagctgataggaattgggctagagt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actgggtatttaggaagctgctttgctgttaggggaagctgataggaattgggctagagt 542

                                                                       
Query: 183 tccctcatgtgcagttagagctaagattaggctgtatggaccaaactagcctaaatccct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tccctcatgtgcagttagagctaagattaggctgtatggaccaaactagcctaaatccct 482

                                                                       
Query: 243 gtggctcacacagtacaggtttgtatttttcttgcatcaaatgcttaccatgagtctgtg 302
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 481 gtggctcacacagtacaggtttgtatttcccttgcatcaaatgcttaccatgagtctgtg 422

                                                                       
Query: 303 tggctgtcagttggtgggatgaggatccttcactgtgacatgtgtgtaatctgcattcgc 362
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggctgtcagttgttgggatgaggatccttcactgtgacatgtgtgtaatctgcattcgc 362

                                                                       
Query: 363 aagacaaggaatggcataattgttgtagctcctactgaagttttgtaaaatctcaagcta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagacaaggaatggcataattgttgtagctcctactgaagttttgtaaaatctcaagcta 302

                                                                       
Query: 423 gaaaaggtccaaaagtcataagaaatatggacttataggcatctattttctacaagcaca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaaaggtccaaaagtcataagaaatatggacttataggcatctattttctacaagcaca 242

                                                 
Query: 483 gaactagtgacagaatggaatgccccaaagggtgccca 520
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaactagtgacagaatggaatgccccaaagggtgccca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space:   464610
Effective search space used:   464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)