BAC Information

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BAC

Clone NameMSMg01-411J04
Chromosome1 (Build37)
Map Location 88,393,270 - 88,393,750
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414
Downstream genePtma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411J04.T7 (MSMg01no411_j04.b1)MSMg01-411J04.TJ (MSMg01no411_j04.g1)
ACCAG508551AG508552
length737733
length of high quality
(start - end)
347 (56 - 402)481 (77 - 557)
definitionCHROMAT_FILE: MSMg01no411_j04.b1 PHD_FILE: MSMg01no411_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:40 2005CHROMAT_FILE: MSMg01no411_j04.g1 PHD_FILE: MSMg01no411_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTACAAGTCTATAATTATTGTGGTTTGAGTTCGGAA
TGTCCCCAAAAGGCTCATGTGTTTGAACAATTGGTACCTGATTGGTGGCC
CTGCTTTAGGAGCCTGTGGAATCTTGGGAGCCTGATTGGGACCACTCTAG
AAGTGTGTAGCAGTAAGTAAGGAGTACCAGTCACAAATTCCAATTGCCAT
GAGCCTGCCACAACCATGCCTTCCCATAGTGGATTAAATCCTCTTCAACC
ATGAGCCAAAATAAAATGAAGAGGAGGAGGAAGAGGAAGAAGAAGAGGAG
GAAAAGGAAGAAGAGGAGAAGTAGGAGGAAGAGGAGGAGGAGGGGAGAAG
GNNTNTNTNNNTTTTTTTNNNTTNNTTTTTTTTNNTTTTTTTNTTTNNTT
TTTTTTTTNNTTTTTTTNNNNTTTTTNTTTTTTTTTTTTTTTTNTTTTTT
NNTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTNNTTTTTTNNTTTTTT
TNNTTTTTTTTTTTTTTTTTTTTNTTTTTTTNNTTTTTTTTNNNTTTTTT
TTTTTTNTNTTTTTTNNTTTTTTTTTTTTTTTTNTTTTTTTTTTNTNNTT
NNTTTTTTTTTTTTTNNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNNNNTTTTTTTTTTTTTTTTTTTTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCG
AACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCG
TGCACCACCACACCCAGCGTTTTTGGACATGGTTTTATGTAGCCTAGATT
GACCTCAGACTTGCTTGTTATATAATGGAGGGTGGCCTGGAACCACTTAT
TCTTCTGGAATCATGGGAATATGGTAGCATACCCTGTGAATTTTCAGGTT
CAACCAAGCGCTGTGCCTTATGGATGTTCATCCTACCTGGGCGTCTCAGG
CCTGGAGTGAAGAGTGGGCAGGCCTAGGCCTTTCTGGGTGGACCCTTTAA
AGGGGCTAAGATTCTAGTTAAGGGAGAATAAAACCAGGGTATGCACTTGC
TTAACCTCCTCAGCAGCAAGACCTAGCTCAAGGGCTCTTCCCACCTCCCA
AACTATGACCCATAATTGGATAATCAGTAGGTACCTGACTTTGGTTGTTG
GAGGCCCCTTAGGGTACCAGGCAATTTTGAGCAGTGGTTGCCCTCCTACC
TAGTTGTACAGGTATGGGGTAGCTTGCCCACGCGGCTCTAGGTCACTGTT
GAGTGATCTCTGGAGGAGAGGAACAACTCCTCCCCCACCCCAGTGATTGG
TTAATCTCCCCCTGGCTCGGTAATTCTTGGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_j04.g1 MSMg01no411_j04.g1 CHROMAT_FILE:
MSMg01no411_j04.g1 PHD_FILE: MSMg01no411_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:40 2005
         (481 letters)



>mm_chr1_88393070_88393950
          Length = 881

 Score =  891 bits (461), Expect = 0.0
 Identities = 476/481 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcccgagtgc 260

                                                                       
Query: 61  tgggattaaaggcgtgcaccaccacacccagcgtttttggacatggttttatgtagccta 120
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggtgtgcaccaccacacccagcatttttggacatggttttatgtagccta 320

                                                                       
Query: 121 gattgacctcagacttgcttgttatataatggagggtggcctggaaccacttattcttct 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattgatctcagacttgcttgttatataatggagggtggcctggaaccacttattcttct 380

                                                                       
Query: 181 ggaatcatgggaatatggtagcataccctgtgaattttcaggttcaaccaagcgctgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatcatgggaatatggtagcataccctgtgaattttcaggttcaaccaagcgctgtgc 440

                                                                       
Query: 241 cttatggatgttcatcctacctgggcgtctcaggcctggagtgaagagtgggcaggccta 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttagggatgttcatcctacctgggcgtctcaggcctggagtgaagagtgggcaggccta 500

                                                                       
Query: 301 ggcctttctgggtggaccctttaaaggggctaagattctagttaagggagaataaaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcctttctgggtggaccctttaaaggggctaagattctagttaagggagaataaaacca 560

                                                                       
Query: 361 gggtatgcacttgcttaacctcctcagcagcaagacctagctcaagggctcttcccacct 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 gggtatgcacttgcttaacctcctcagccgcaagacctagctcaagggctcttcccacct 620

                                                                       
Query: 421 cccaaactatgacccataattggataatcagtaggtacctgactttggttgttggaggcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaaactatgacccataattggataatcagtaggtacctgactttggttgttggaggcc 680

            
Query: 481 c 481
           |
Sbjct: 681 c 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)