BAC Information

Click to search

BAC

Clone NameMSMg01-411O08
Chromosome1 (Build37)
Map Location 112,380,367 - 112,380,893
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7, LOC100041429
Downstream geneEG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411O08.T7 (MSMg01no411_o08.b1)MSMg01-411O08.TJ (MSMg01no411_o08.g1)
ACCAG508798AG508799
length728728
length of high quality
(start - end)
527 (80 - 606)482 (77 - 558)
definitionCHROMAT_FILE: MSMg01no411_o08.b1 PHD_FILE: MSMg01no411_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:06 2005CHROMAT_FILE: MSMg01no411_o08.g1 PHD_FILE: MSMg01no411_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTAATTTCATAATGTATGTTCATTTTCATTTTTCATTC
CATTAATTAAAAGGATATTAGAAAACTGCTCATGAAAGAAATATTAGCAA
ATTGAAGACTAAGTGACTAAACTACAGTTAAGAGTATATTTCAATTAACT
GTGAAGAAGTTGACTTGTATTTGAAGTAAAATTGACTTTATTATTTACAT
GAATGATTGGGTTACTTGCTTCAGAGTTATGGGTAAAAATAATAAAAGTA
AATTTTTACTGAATCAAATCATTGTTTCTTTATATTTTATGTATTGCTGA
ATTATTTCTTTGTCCTGGTCAATCCTAATTTGAAGACTATTCTATTTAAG
GAACTGTATATTAGATTCCTGAATGGATGTTTAGTTACAAATATTATACA
AAATAGGCAAAGCCACACCTAGAAAAGTCTAACGACAGGAGGAATACTGC
CTTATCTCTAGTAGAATTTAGTCTTTACACTCTCTGGCTTCTGGAAGAAA
CACATTACCATTGAATCAGTANAATTTGAGACTTAGCGCTGATGTCTACT
GTGGGCAAGATGAGGTAACAGTAGCGGCGCCTATTCTAAGCTGCCTGAGT
GACATCTATTCTGCCTCTGGGACTTTGTTTACCTAAACTCTGAGCAAGAA
CCCCGGTTTCTGGTATAAATGCCTGCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCT
GAGTAGGACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
TATCAAAACAACCCTGAGATTCCAACTCATACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGTTGACAGTAGATGCTGGCGAGGATTTGGAGAAAGGAGC
ACTCCTCCATTGTTGATGGGAGTGCAAGCTTGTACACCCACTCTGGAAAT
CAGTCTTGTAGTTCCTCATATTATTGGACATAATACTACTGGAAGATCCT
GCAATACCTCTCCTAGGCATATATCCAGAAGATGTTCCAACCGATAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATATCCCTCAGCAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAGTACTACTTGGTAATTAAAAAGAATGAATT
TATGATACGCCTAGGCCAATGGATGGACCTGGAGGGCATCATTATGAGTG
AGGTAACCCCATCAGAAAGAACTCTCACTATATGTACTCACTGATTAATG
GATATTATCCCACAAACTTAGAAGATACAGTTTGCCTAACGCATGATACT
CTTGATAAACGAACACCAATGTGTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_o08.b1 MSMg01no411_o08.b1 CHROMAT_FILE:
MSMg01no411_o08.b1 PHD_FILE: MSMg01no411_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:06 2005
         (527 letters)



>mm_chr1_112380167_112381093
          Length = 927

 Score =  944 bits (488), Expect = 0.0
 Identities = 517/527 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcattttcatttttcattccattaattaaaaggatattagaaaactgctcatgaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gttcattttcatttttcattccattaattaaaaggatattagaaaactgctcatgaaaga 668

                                                                       
Query: 61  aatattagcaaattgaagactaagtgactaaactacagttaagagtatatttcaattaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aatattagcaaattgaagactaagtgactaaactacagttaagagtatatttcaattaac 608

                                                                       
Query: 121 tgtgaagaagttgacttgtatttgaagtaaaattgactttattatttacatgaatgattg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 607 tgtgaagaagttgacttgtatttgaagtaaaattgactttattatttatatgaatgattg 548

                                                                       
Query: 181 ggttacttgcttcagagttatgggtaaaaataataaaagtaaatttttactgaatcaaat 240
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 547 ggttacttgcttcagagtaatgggtaaaaataataaaagtaaatttatactgaatcaaat 488

                                                                       
Query: 241 cattgtttctttatattttatgtattgctgaattatttctttgtcctggtcaatcctaat 300
           |||||  || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 487 cattgcctcattatattttatgtattgctaaattatttctttgtcctggtcaatcctaat 428

                                                                       
Query: 301 ttgaagactattctatttaaggaactgtatattagattcctgaatggatgtttagttaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgaagactattctatttaaggaactgtatattagattcctgaatggatgtttagttaca 368

                                                                       
Query: 361 aatattatacaaaataggcaaagccacacctagaaaagtctaacgacaggaggaatactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aatattatacaaaataggcaaagccacacctagaaaagtctaacgacaggaggaatactg 308

                                                                       
Query: 421 ccttatctctagtagaatttagtctttacactctctggcttctggaagaaacacattacc 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 307 ccttatctctagtagaatttagtctttacactctctggtttctggaagaaacacattacc 248

                                                          
Query: 481 attgaatcagtanaatttgagacttagcgctgatgtctactgtgggc 527
           |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 247 attgaatcagtaaaatttgagacttagtgctgatgtctactgtgggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)