AGGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAAGACCGCG
GAATTCACCTTTTTACAAACATAACTGAGATACTTATTTTATCCACTTAA
ACTATTTTTGAGTAGCAGTAATGCCTTTGTGGTCTAGAAATGAAAACATA
TAAAATTTAATACACTGTATTTCTACACGGTACACATATAAATCATAAAG
CAAAAACTGAAAATGAAACTAGTTCATCAATATTTTTTTTTACCAATAGA
TAACAAGCCTTATAGGAAAAAAGTCCAAAGCAGAAATTTGCAACTTAATT
TTGTAATTTCTTAAAATATCTTTTTTCTTCCTCAAATCACTGTGTCTAAA
GATGACAGTTTTCCCTGTGTATTTTTTTAGAATAAAACACAAAAAGTACT
CTAACACGGTATATGGTTTTTCAATTTCAAATAAATTTCTTAATACAAAG
GGTAACAAATCATGTTTTATGTTTATATTATGCTAAAATTATATTACATG
GAGGAAGAACTCTTTAAGGTTTATTATTTTGTGTGTGTCTAAATGTGCAC
CACATTTATATAATGCCCACAGAGCCCTCTGAAGAGGGTGCTGTGTATTT
TCAGAATCTATAGCCACAGATGGTTTTAAGTCATTTTGTGCTAAGAATCT
AACTATTATCCCCTTTGCAAGAGTACTATGTAATTTCAACCACTGAGCCA
AATCTCCAGAAATTCTTTCCTTTTGATTCCCAAACCTAACG

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGT
GTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCCGTCTGGCGGTTCCTCAGAATATTGGACATAGTACTACTGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACCACTCAGCTATTATAAAG
AATGAATTTATGAAATTCCTAGTCCAATGGATGGACCTGGAGGGCTTCAT
CCTGAGTGAGGAAAACTTTCCCAAGGGAACTCTCCCCTATGTACTTCCTG
AGAAGGGGATTTTTTCCCAAAACTAGGAAACCCCGAAAAATATAAAATTT
TCTTTACCCCTGATATCTTGAAAAATGAAACGTAGTGGGGGCCTTTATCC
TCCCCTAAAAAGG

Query= MSMg01no412_e08.b1 MSMg01no412_e08.b1 CHROMAT_FILE:
MSMg01no412_e08.b1 PHD_FILE: MSMg01no412_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:35 2005
         (508 letters)



>mm_chr1_179694756_179695664
          Length = 909

 Score =  907 bits (469), Expect = 0.0
 Identities = 499/509 (98%), Gaps = 1/509 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagatacttattttatccacttaaactatttttgagtagcagtaatgcctttgtggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgagatacttattttatccacttaaactatttttgagtagcagtaatgcctttgtggtct 650

                                                                       
Query: 61  agaaatgaaaacatataaaatttaatacactgtatttctacacggtacacatataaatca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 649 agaaatgaaaatatataaaatttaatacactgtatttctacacggtacacacataaatca 590

                                                                       
Query: 121 taaagcaaaaactgaaaatgaaactagttcatcaa-tatttttttttaccaatagataac 179
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 589 taaagcaaaaactgaaaatgaaactagttcatcaattttttttttttaccaatagataac 530

                                                                       
Query: 180 aagccttataggaaaaaagtccaaagcagaaatttgcaacttaattttgtaatttcttaa 239
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aagtcttacaggaaaaaagtccaaagcagaaatttgcaacttaattttgtaatttcttaa 470

                                                                       
Query: 240 aatatcttttttcttcctcaaatcactgtgtctaaagatgacagttttccctgtgtattt 299
           || |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagatcaattttcttcctcaaatcactgtgtctaaagatgacagttttccctgtgtattt 410

                                                                       
Query: 300 ttttagaataaaacacaaaaagtactctaacacggtatatggtttttcaatttcaaataa 359
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 409 ttttagaataaaacacaaaaagtactctaacacgatatatggtttttcaatttcaaataa 350

                                                                       
Query: 360 atttcttaatacaaagggtaacaaatcatgttttatgtttatattatgctaaaattatat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atttcttaatacaaagggtaacaaatcatgttttatgtttatattatgctaaaattatat 290

                                                                       
Query: 420 tacatggaggaagaactctttaaggtttattattttgtgtgtgtctaaatgtgcaccaca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tacatggaggaagaactctttaaggtttattattttgtgtgtgtctaaatgtgcaccaca 230

                                        
Query: 480 tttatataatgcccacagagccctctgaa 508
           |||||||||||||||||||||||||||||
Sbjct: 229 tttatataatgcccacagagccctctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space:   447702
Effective search space used:   447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)