BAC Information

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BAC

Clone NameMSMg01-412H03
Chromosome1 (Build37)
Map Location 94,334,042 - 94,545,351
singlet/doubletdoublet
Overlap geneNdufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos
Upstream genePer2, Traf3ip1, Asb1, Twist2, Hdac4, LOC100040419, LOC665883
Downstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412H03.T7 (MSMg01no412_h03.b1)MSMg01-412H03.TJ (MSMg01no412_h03.g1)
ACCAG509217AG509218
length766779
length of high quality
(start - end)		462 (49 - 510)398 (81 - 478)
definitionCHROMAT_FILE: MSMg01no412_h03.b1 PHD_FILE: MSMg01no412_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:48 2005CHROMAT_FILE: MSMg01no412_h03.g1 PHD_FILE: MSMg01no412_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,544,894 - 94,545,351)(94,334,042 - 94,334,439)
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCCTTTTCACGTCCAAGGTAACATGTTTAGTTAAGCTCTTT
CAAAGTCCGATAGGGATGTGTGTGTTTGAGGACAAACATGGGTGACATTA
GAAGTCTGCGCCCCCCTCCTTTGTAGGAGCAGGGATGGCACTTCCAAAAG
GAAATGTGTCTACCAGGGCATGTTTAGAGGGACAAGGGGCAGCATGACTT
CTAGAACCTCTGAATCCCAGCTCTGTGTGGTCACATGACGCCACTCTCCT
TGGGTTTGAATCCAGCCAGAAGACTCCAGCCCTGTCAGTGAGGTACTGCT
CAGTCCCTGGGACACCCGGGTACTCTGCAGGCACAAGCGGGAGGGCAATG
CTGCCATCTGGGACGGAGGACTTAGGGCAGATGTCAGTCTGGGAGATGTG
AGGAGAAGGCAGACTGTGAGCCATCACCCCCTGCACCCCAGTACTTATGC
TGGCCACGGTCCAGGAAACAGAAAGTGACTCTAGGATCAGTTATAAGCCA
CTTCCGAGGCTTTGCGGGGCTCGGTGATGAATGACCAGTGCTAAAAACTG
TCGAACCATTCTGTGGCAGAGAAGAAAGCGTGATAACACATTGTCACTTA
TAAAATGGGCCCTTTAAACTTTAAATTTTAACTTCCGGCTGTGGGCTTGG
TTTGACTATTCCATCGGTGTATGTTCTCTCACCTCGCTCCCTTCCTTTTA
TTTACACGATATTCCT

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGAGAGCAGGACACACC
AAAACTCAGAGCTTGGGTCTCCGGACAAGTCCAGGGCCTTGCAGCTGAAA
AGGGCAATTTCCCTCAAATTCCAGTCATCTTCTAATCCTGGGTTTGCTTC
CTTTCACATGAGCTTCCCGCTAAAGAAACCCAACAGGAAGAAAGGACCTG
AGGGCTGAGGTCCTGGCAGAAGCACTGCCCTCAGGGCTGGCTTTATATTA
GATGAAGAGGCCAGGGTGCCTCAGGCTCTTTCCTCCATTCACCCAGCTCT
GAGCTGTCTCCTTTCAACGCCCTTGTAGCCTGGTGCTACAGCCCTAACCT
TGCTCATCAGCCCCAGGGCAGGCCTGCCTGGCTCCTTGGCGCCAGCACAT
ACTGCTCACAGCCAATCCAGAAGTCCGTTTTGGTAAACAGAACACAGGAT
GTTTCCAAGCAATTAGGAGTCAGCAGGCTTTATAACAGGGGCCCGTGTTA
CGCAAGAAAACATGGTTTATTCCGGGTGGACTGTGCCGGCCCCCCCTTAA
AAAGTGTAACCTGAATGCCGTGCCTTGAACCCTTCGGAATTTTTCCTTCT
TGAAAGGCCCATTAATCTAATGGTGGTCCTTAATGAAATAACTTTCTTAT
GTTTGCCCCGCCACTTATCCGTATATAACCACGCGGTGGGCGAAATTACG
CTTCCCATACTCCCCCAATATACTCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_h03.b1 MSMg01no412_h03.b1 CHROMAT_FILE:
MSMg01no412_h03.b1 PHD_FILE: MSMg01no412_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:48 2005
         (462 letters)



>mm_chr1_94544690_94545551
          Length = 862

 Score =  855 bits (442), Expect = 0.0
 Identities = 454/458 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccttttcacgtccaaggtaacatgtttagttaagctctttcaaagtccgata 64
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 662 gaattctcccttttcatgtccaaggtaacatgtttagttaagctctttaaaagtccgata 603

                                                                       
Query: 65  gggatgtgtgtgtttgaggacaaacatgggtgacattagaagtctgcgcccccctccttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gggatgtgtgtgtttgaggacaaacatgggtgacattagaagtctgcgcccccctccttt 543

                                                                       
Query: 125 gtaggagcagggatggcacttccaaaaggaaatgtgtctaccagggcatgtttagaggga 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtaggagcagggatggcacttcccaaaggaaatgtgtctaccagggcatgtttagaggga 483

                                                                       
Query: 185 caaggggcagcatgacttctagaacctctgaatcccagctctgtgtggtcacatgacgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 caaggggcagcatgacttctagaacctctgaatcccagctctgtgtggtcacatgacgcc 423

                                                                       
Query: 245 actctccttgggtttgaatccagccagaagactccagccctgtcagtgaggtactgctca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 actctccttgggtttgaatccagccagaagactccagccctgtcagtgaggtactgctca 363

                                                                       
Query: 305 gtccctgggacacccgggtactctgcaggcacaagcgggagggcaatgctgccatctggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtccctgggacacccgggtactctgcaggcacaagcgggagggcaatgctgccatctggg 303

                                                                       
Query: 365 acggaggacttagggcagatgtcagtctgggagatgtgaggagaaggcagactgtgagcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acggaggacttagggcagatgtcagtctgggagatgtgaggagaaggcagactgtgagcc 243

                                                 
Query: 425 atcaccccctgcaccccagtacttatgctggccacggt 462
           |||||||||| |||||||||||||||||||||||||||
Sbjct: 242 atcaccccctacaccccagtacttatgctggccacggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no412_h03.g1 MSMg01no412_h03.g1 CHROMAT_FILE:
MSMg01no412_h03.g1 PHD_FILE: MSMg01no412_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:48 2005
         (398 letters)



>mm_chr1_94333842_94334639
          Length = 798

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagagagcaggacacaccaaaactcagagcttgggtctccggacaagtccagggcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagagagcaggacacaccaaaactcagagcttgggtctccggacaagtccagggcctt 260

                                                                       
Query: 61  gcagctgaaaagggcaatttccctcaaattccagtcatcttctaatcctgggtttgcttc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagcttaaaagggcaatttccctcaaattccagtcatcttctaatcctgggtttgcttc 320

                                                                       
Query: 121 ctttcacatgagcttcccgctaaagaaacccaacaggaagaaaggacctgagggctgagg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcacatgagtttcccgctaaagaaacccaacaggaagaaaggacctgagggctgagg 380

                                                                       
Query: 181 tcctggcagaagcactgccctcagggctggctttatattagatgaagaggccagggtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctggcagaagcactgccctcagggctggctttatattagatgaagaggccagggtgcc 440

                                                                       
Query: 241 tcaggctctttcctccattcacccagctctgagctgtctcctttcaacgcccttgtagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaggctctttcctccattcacccagctctgagctgtctcctttcaacgcccttgtagcc 500

                                                                       
Query: 301 tggtgctacagccctaaccttgctcatcagccccagggcaggcctgcctggctccttggc 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtgctacagcgctaaccttgctcatcagccccagggcaggcctgcctggctccttggc 560

                                                 
Query: 361 gccagcacatactgctcacagccaatccagaagtccgt 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccagcacatactgctcacagccaatccagaagtccgt 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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