Query= MSMg01no413_a16.b1 MSMg01no413_a16.b1 CHROMAT_FILE:
MSMg01no413_a16.b1 PHD_FILE: MSMg01no413_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:36 2005
(587 letters)
>mm_chr1_43464296_43465282
Length = 987
Score = 1065 bits (551), Expect = 0.0
Identities = 578/587 (98%)
Strand = Plus / Minus
Query: 1 caagagcgggataatatacacaagcatggggctcagtgttctgtcttcaagcttagaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 caagagcgggataatatacacaagcatggggctcagtgttctgtcttcaagcttagaata 593
Query: 61 agagagttcacatttcccccaggtggaagtagggacagagaaaatgtgcaaagctgacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agagagttcacatttcccccaggtggaagtagggacagagaaaatgtgcaaagctgacat 533
Query: 121 ttttgtgagacacagtctgtaagtaaggttggataaagaagctggagtatggatggaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 532 ttttgtgagacacagtctgtaagtaaggttggataaagaagctggagtacggatggaagc 473
Query: 181 tagttcaattcctaacttcagaacagctgatgtggattgcctactgaaagagtctcttct 240
|||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 472 tagttcaattcccaacttcagaacggctgatgtggcttgcctactgaaagagtctcttct 413
Query: 241 gtcttcctctctttctcatacacatatgtgcacatgcatgcaacatatatacaacatacc 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtgttcctctctttctcatacacatatgtgcacatgcatgcaacatatatacaacatacc 353
Query: 301 ctcactttgattttatacttctttgctagcacagagactctgtgttctctgtttctcagg 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctcactttgatgttatacttctttgctagcacagagactctgtgttctctgtttctcaga 293
Query: 361 aatcatctacaattaatatataagataaaataacagaagaaacaggtctgggatgcccta 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 292 aatcatctacaattaatatataagataaaatagcagaagaaacaggtctgggatgcccta 233
Query: 421 taatagaagttgaattaaaaatcatcctgcagggggctggcgagatggctcagcggttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 taatagaagttgaattaaaaatcatcctgcagggggctggcgagatggctcagcggttaa 173
Query: 481 tagcactaactgctcttccgaaggtcctgagttcaaatctcaacaaccacatggtggctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tagcactaactgctcttccgaaggtcctgagttcaaatctcaacaaccacatggtggctc 113
Query: 541 acaaccatccataatgtgattcgatgccctcttctggggtgtctgaa 587
||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 112 acaaccatccataatgtgatttgatgccctcttctggggtgtctgaa 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_a16.g1 MSMg01no413_a16.g1 CHROMAT_FILE:
MSMg01no413_a16.g1 PHD_FILE: MSMg01no413_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:36 2005
(395 letters)
>mm_chr1_43258504_43259298
Length = 795
Score = 667 bits (345), Expect = 0.0
Identities = 385/403 (95%), Gaps = 9/403 (2%)
Strand = Plus / Plus
Query: 1 ccccatgtctgtacacttggatagtttgccatgagatcatgaaatcctcttctcagtcca 60
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 194 cccc-tgtctgtacacttggatagtttgccatgaaatcatgaaatcctcttctcagtcca 252
Query: 61 tcagttaactatctatagtgcttctcagacaggctgagctgatccatgctggaccatgca 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcagctaactatctatagtgcttctcagacaggctgagctgatccatgctggaccatgca 312
Query: 121 gcttcagcactaaacccatctggagctgtcagcaccattacggtagtcatcactcagcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 313 gcttcagcactaaacccatctggagctgtcagcaccattacggtagtcatcactcagggc 372
Query: 181 tcttgccatggccttcagca--------ccaccaccccccgtttctcctctcaccatagg 232
|||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 373 tcttgccatggccttcagcaacccccccccccccccccccgtttctcctctcaccatagg 432
Query: 233 tcacattgaccattgactgccatggccaactttgagagtctgtcactgttgctctttgct 292
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcacactgaccattgactgccatggccaactttgagagtctgtcactgttgctctttgct 492
Query: 293 ctggggtgggtagatagtggttgagttccttctgtgaccctgatactatagctccccgag 352
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 493 ctggggtgggtagatagtggttgagttccttctgtgaccctgataccatagctccctgag 552
Query: 353 tctgcccagctagtaactgggtcctctgtccattgcccatcag 395
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 553 tctgcccagctagtaactgggtcccctgtccattgcccatcag 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
