Query= MSMg01no413_a17.b1 MSMg01no413_a17.b1 CHROMAT_FILE:
MSMg01no413_a17.b1 PHD_FILE: MSMg01no413_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:36 2005
(557 letters)
>mm_chr1_43464291_43465247
Length = 957
Score = 990 bits (512), Expect = 0.0
Identities = 542/552 (98%)
Strand = Plus / Minus
Query: 6 aattcatggactatacatcaagagcgggataatatacacaagcatggggctcagtgttct 65
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aattcatggacgataaatcaagagcgggataatatacacaagcatggggctcagtgttct 616
Query: 66 gtcttcaagcttagaataagagagttcacatttcccccaggtggaagtagggacagagaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtcttcaagcttagaataagagagttcacatttcccccaggtggaagtagggacagagaa 556
Query: 126 aatgtgcaaagctgacatttttgtgagacacagtctgtaagtaaggttggataaagaagc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aatgtgcaaagctgacatttttgtgagacacagtctgtaagtaaggttggataaagaagc 496
Query: 186 tggagtatggatggaagctagttcaattcctaacttcagaacagctgatgtggattgcct 245
||||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct: 495 tggagtacggatggaagctagttcaattcccaacttcagaacggctgatgtggcttgcct 436
Query: 246 actgaaagagtctcttctgtcttcctctctttctcatacacatatgtgcacatgcatgca 305
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 435 actgaaagagtctcttctgtgttcctctctttctcatacacatatgtgcacatgcatgca 376
Query: 306 acatatatacaacataccctcactttgattttatacttctttgctagcacagagactctg 365
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 375 acatatatacaacataccctcactttgatgttatacttctttgctagcacagagactctg 316
Query: 366 tgttctctgtttctcaggaatcatctacaattaatatataagataaaataacagaagaaa 425
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 315 tgttctctgtttctcagaaatcatctacaattaatatataagataaaatagcagaagaaa 256
Query: 426 caggtctgggatgccctataatagaagttgaattaaaaatcatcctgcagggggctggcg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caggtctgggatgccctataatagaagttgaattaaaaatcatcctgcagggggctggcg 196
Query: 486 agatggctcagcggttaatagcactaactgctcttccgaaggtcctgagttcaaatctca 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agatggctcagcggttaatagcactaactgctcttccgaaggtcctgagttcaaatctca 136
Query: 546 acaaccacatgg 557
||||||||||||
Sbjct: 135 acaaccacatgg 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_a17.g1 MSMg01no413_a17.g1 CHROMAT_FILE:
MSMg01no413_a17.g1 PHD_FILE: MSMg01no413_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:36 2005
(518 letters)
>mm_chr1_43258504_43259420
Length = 917
Score = 866 bits (448), Expect = 0.0
Identities = 503/526 (95%), Gaps = 10/526 (1%)
Strand = Plus / Plus
Query: 1 ccccatgtctgtacacttggatagtttgccatgagatcatgaaatcctcttctcagtcca 60
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 194 cccc-tgtctgtacacttggatagtttgccatgaaatcatgaaatcctcttctcagtcca 252
Query: 61 tcagttaactatctatagtgcttctcagacaggctgagctgatccatgctggaccatgca 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcagctaactatctatagtgcttctcagacaggctgagctgatccatgctggaccatgca 312
Query: 121 gcttcagcactaaacccatctggagctgtcagcaccattacggtagtcatcactcagcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 313 gcttcagcactaaacccatctggagctgtcagcaccattacggtagtcatcactcagggc 372
Query: 181 tcttgccatggccttcagca--------ccaccaccccccgtttctcctctcaccatagg 232
|||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 373 tcttgccatggccttcagcaacccccccccccccccccccgtttctcctctcaccatagg 432
Query: 233 tcacattgaccattgactgccatggccaactttgagagtctgtcactgttgctctttgct 292
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcacactgaccattgactgccatggccaactttgagagtctgtcactgttgctctttgct 492
Query: 293 ctggggtgggtagatagtggttgagttccttctgtgaccctgatactatagctccccgag 352
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 493 ctggggtgggtagatagtggttgagttccttctgtgaccctgataccatagctccctgag 552
Query: 353 tctgcccagctagtaactgggtcctctgtccattgcccatcaggagtctgttcatcttgt 412
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 553 tctgcccagctagtaactgggtcccctgtccattgcccatcaggagtctgttcttcttgt 612
Query: 413 cagttctcagggtcagtagattcacatctctccccttcctttcctctctttgattgtctg 472
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 613 cagttctcagggtcagtagattcacatctctccccttcctttcctctctttccttgtctg 672
Query: 473 ttcccgtgactgcccttcctcttcaccatccccaaggggctgggtg 518
|||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 673 ttcctgtgactgcccttcctcttcaccatccccaaggg-ctgggtg 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|