BAC Information

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BAC

Clone NameMSMg01-413A17
Chromosome1 (Build37)
Map Location 43,258,697 - 43,464,965
singlet/doubletdoublet
Overlap geneEG666644
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642
Downstream geneLOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413A17.T7 (MSMg01no413_a17.b1)MSMg01-413A17.TJ (MSMg01no413_a17.g1)
ACCAG509670AG509671
length704705
length of high quality
(start - end)
557 (43 - 599)518 (77 - 594)
definitionCHROMAT_FILE: MSMg01no413_a17.b1 PHD_FILE: MSMg01no413_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:36 2005CHROMAT_FILE: MSMg01no413_a17.g1 PHD_FILE: MSMg01no413_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,464,414 - 43,464,965)(43,258,697 - 43,259,220)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGGACTATACATCAAGAGCGGGATAATATACACAAGCATGGGGCTCA
GTGTTCTGTCTTCAAGCTTAGAATAAGAGAGTTCACATTTCCCCCAGGTG
GAAGTAGGGACAGAGAAAATGTGCAAAGCTGACATTTTTGTGAGACACAG
TCTGTAAGTAAGGTTGGATAAAGAAGCTGGAGTATGGATGGAAGCTAGTT
CAATTCCTAACTTCAGAACAGCTGATGTGGATTGCCTACTGAAAGAGTCT
CTTCTGTCTTCCTCTCTTTCTCATACACATATGTGCACATGCATGCAACA
TATATACAACATACCCTCACTTTGATTTTATACTTCTTTGCTAGCACAGA
GACTCTGTGTTCTCTGTTTCTCAGGAATCATCTACAATTAATATATAAGA
TAAAATAACAGAAGAAACAGGTCTGGGATGCCCTATAATAGAAGTTGAAT
TAAAAATCATCCTGCAGGGGGCTGGCGAGATGGCTCAGCGGTTAATAGCA
CTAACTGCTCTTCCGAAGGTCCTGAGTTCAAATCTCAACAACCACATGGT
GGCTCATAACCATCCATAATGTGATTTGATGCCCTCTTCTGGGGTGTCTG
AAGACAACTAAACTACAGTGAACTTACATATAATAAATACATCTTTACAA
ACAA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCCATGTCTGTACACTTGGATAG
TTTGCCATGAGATCATGAAATCCTCTTCTCAGTCCATCAGTTAACTATCT
ATAGTGCTTCTCAGACAGGCTGAGCTGATCCATGCTGGACCATGCAGCTT
CAGCACTAAACCCATCTGGAGCTGTCAGCACCATTACGGTAGTCATCACT
CAGCGCTCTTGCCATGGCCTTCAGCACCACCACCCCCCGTTTCTCCTCTC
ACCATAGGTCACATTGACCATTGACTGCCATGGCCAACTTTGAGAGTCTG
TCACTGTTGCTCTTTGCTCTGGGGTGGGTAGATAGTGGTTGAGTTCCTTC
TGTGACCCTGATACTATAGCTCCCCGAGTCTGCCCAGCTAGTAACTGGGT
CCTCTGTCCATTGCCCATCAGGAGTCTGTTCATCTTGTCAGTTCTCAGGG
TCAGTAGATTCACATCTCTCCCCTTCCTTTCCTCTCTTTGATTGTCTGTT
CCCGTGACTGCCCTTCCTCTTCACCATCCCCAAGGGGCTGGGTGTGGTGT
TAACAATGCTCCTGGCTCCCAGCCTATTGAGTTGGGGGCCTTTTGGCTAG
GCTCACAATACCATCGCAGTTTTTGGCTTTGATTTTTGTTGAACGTTCTC
AACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_a17.b1 MSMg01no413_a17.b1 CHROMAT_FILE:
MSMg01no413_a17.b1 PHD_FILE: MSMg01no413_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:36 2005
         (557 letters)



>mm_chr1_43464291_43465247
          Length = 957

 Score =  990 bits (512), Expect = 0.0
 Identities = 542/552 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcatggactatacatcaagagcgggataatatacacaagcatggggctcagtgttct 65
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aattcatggacgataaatcaagagcgggataatatacacaagcatggggctcagtgttct 616

                                                                       
Query: 66  gtcttcaagcttagaataagagagttcacatttcccccaggtggaagtagggacagagaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtcttcaagcttagaataagagagttcacatttcccccaggtggaagtagggacagagaa 556

                                                                       
Query: 126 aatgtgcaaagctgacatttttgtgagacacagtctgtaagtaaggttggataaagaagc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aatgtgcaaagctgacatttttgtgagacacagtctgtaagtaaggttggataaagaagc 496

                                                                       
Query: 186 tggagtatggatggaagctagttcaattcctaacttcagaacagctgatgtggattgcct 245
           ||||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct: 495 tggagtacggatggaagctagttcaattcccaacttcagaacggctgatgtggcttgcct 436

                                                                       
Query: 246 actgaaagagtctcttctgtcttcctctctttctcatacacatatgtgcacatgcatgca 305
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 435 actgaaagagtctcttctgtgttcctctctttctcatacacatatgtgcacatgcatgca 376

                                                                       
Query: 306 acatatatacaacataccctcactttgattttatacttctttgctagcacagagactctg 365
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 375 acatatatacaacataccctcactttgatgttatacttctttgctagcacagagactctg 316

                                                                       
Query: 366 tgttctctgtttctcaggaatcatctacaattaatatataagataaaataacagaagaaa 425
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 315 tgttctctgtttctcagaaatcatctacaattaatatataagataaaatagcagaagaaa 256

                                                                       
Query: 426 caggtctgggatgccctataatagaagttgaattaaaaatcatcctgcagggggctggcg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caggtctgggatgccctataatagaagttgaattaaaaatcatcctgcagggggctggcg 196

                                                                       
Query: 486 agatggctcagcggttaatagcactaactgctcttccgaaggtcctgagttcaaatctca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agatggctcagcggttaatagcactaactgctcttccgaaggtcctgagttcaaatctca 136

                       
Query: 546 acaaccacatgg 557
           ||||||||||||
Sbjct: 135 acaaccacatgg 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no413_a17.g1 MSMg01no413_a17.g1 CHROMAT_FILE:
MSMg01no413_a17.g1 PHD_FILE: MSMg01no413_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:36 2005
         (518 letters)



>mm_chr1_43258504_43259420
          Length = 917

 Score =  866 bits (448), Expect = 0.0
 Identities = 503/526 (95%), Gaps = 10/526 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccatgtctgtacacttggatagtttgccatgagatcatgaaatcctcttctcagtcca 60
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 194 cccc-tgtctgtacacttggatagtttgccatgaaatcatgaaatcctcttctcagtcca 252

                                                                       
Query: 61  tcagttaactatctatagtgcttctcagacaggctgagctgatccatgctggaccatgca 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcagctaactatctatagtgcttctcagacaggctgagctgatccatgctggaccatgca 312

                                                                       
Query: 121 gcttcagcactaaacccatctggagctgtcagcaccattacggtagtcatcactcagcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 313 gcttcagcactaaacccatctggagctgtcagcaccattacggtagtcatcactcagggc 372

                                                                       
Query: 181 tcttgccatggccttcagca--------ccaccaccccccgtttctcctctcaccatagg 232
           ||||||||||||||||||||        || || ||||||||||||||||||||||||||
Sbjct: 373 tcttgccatggccttcagcaacccccccccccccccccccgtttctcctctcaccatagg 432

                                                                       
Query: 233 tcacattgaccattgactgccatggccaactttgagagtctgtcactgttgctctttgct 292
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcacactgaccattgactgccatggccaactttgagagtctgtcactgttgctctttgct 492

                                                                       
Query: 293 ctggggtgggtagatagtggttgagttccttctgtgaccctgatactatagctccccgag 352
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 493 ctggggtgggtagatagtggttgagttccttctgtgaccctgataccatagctccctgag 552

                                                                       
Query: 353 tctgcccagctagtaactgggtcctctgtccattgcccatcaggagtctgttcatcttgt 412
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 553 tctgcccagctagtaactgggtcccctgtccattgcccatcaggagtctgttcttcttgt 612

                                                                       
Query: 413 cagttctcagggtcagtagattcacatctctccccttcctttcctctctttgattgtctg 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 613 cagttctcagggtcagtagattcacatctctccccttcctttcctctctttccttgtctg 672

                                                         
Query: 473 ttcccgtgactgcccttcctcttcaccatccccaaggggctgggtg 518
           |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 673 ttcctgtgactgcccttcctcttcaccatccccaaggg-ctgggtg 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space:   460756
Effective search space used:   460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)