BAC Information

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BAC

Clone NameMSMg01-413D01
Chromosome1 (Build37)
Map Location 196,999,632 - 196,999,994
singlet/doubletsinglet
Overlap geneCr2
Upstream geneEG623172, Plxna2, Cd34, Cd46, Crry
Downstream geneEG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413D01.T7 (MSMg01no413_d01.b1)MSMg01-413D01.TJ (MSMg01no413_d01.g1)
ACCAG509782AG509783
length732746
length of high quality
(start - end)
645 (38 - 682)415 (66 - 480)
definitionCHROMAT_FILE: MSMg01no413_d01.b1 PHD_FILE: MSMg01no413_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:47 2005CHROMAT_FILE: MSMg01no413_d01.g1 PHD_FILE: MSMg01no413_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCA
ACAAGGTTACAGAAGCCACTGTTGTAGGGTAATGATCTAATGTCCTCTCA
GCGGATATTTTGGAATGGATCCATAACAATGGGCCTTCTTGTCACAATAA
TCCTGTGGGTTGCATCTCAGTAGGTAATATTATCAAAATGATGGGTAACC
CTTCTCTACAATGCTGAAGCTGGGCTTTAATCAATTCTTCTTCCACTAGG
GCAAGGGCCTTTCTAGCCTCAGGTGTTAATTCCCTTTTGGAACTTAACTC
TGAGTCTCCTTCTAAAATTTGAAACAGAGGTTTTAATTTAACATTTGGGA
TCTTCAAATAGGGCCGAATCCAATTGATATTGCCTAATAATTTCTGAAAA
TCATTTAAAGTATGCAAGGAATCAACCCTCAATTGTATCTTTTGAGGCCA
AACGGCCGTAGGAGCGAACCTTGCTCCTAAATAGGACACTATTTTTAACA
AATCCCTACCCCATAAGGTAATGGGTAGCTCAAACACATATGGTTGAAAC
ATTCCCATCATGCCCTTCCTTATCTTTCCAAGGGAGCATCCTGGCACTTA
TGTCTGGGCTCTTTGCATAGCCCAGGTCTTGTAATATTTGTTCTGACTCC
TGAATCGACCATCCTTTTGGCCAGTCCTTAAACCAAAAGGCAGTAAGAAA
AATTACCCAAATGGCTAGAACAAGATAGTAAC
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCTGTACTGGGGCATATGATCTTCACAAGACCAA
AGGCTTCTCCTCCCATTGATGGCCGACTAGGCCATCTTCTGATACATATG
CAGCTAGAGACACAGTTCGGGGGGGGGGTACTGGTTAGTTTATATTGTTG
TTCCTACTATAGGGTTGCAGGCCCCTTTAGTTCCTTGGGTACTTTCTCTA
GCTCCTCCATTGAGGGCTCTGTGTTCCATCCAATAGATGACTGTGAGCAT
CCACTTCTGTATTTGGTAATGGCCTTTATTTCATTGCTAATGACAAGTTC
TTTTCTCTGATATATCAGAAAGCTTTTACTAGCTATTTTGGGGTTTCTTT
ACTCTAGTTTGTTAAAATAAGAAAGCAAATATAATGAGAAGTACAGTACT
AGAGAGGTTGAGGTAGAAGGACTCTAAGATCAAGGTTATATAGCGAGACT
TTATCTTATATAGCCTTATATAATACATAAGCCCGTTCCATGACCCTTGA
ATTTGTTTTTTCTCTATATGATAAAGGCTACCGACCAATACATGTTTATT
ATTCCCTTTACTGTGATTTGTATTTTCCAAGATCCTCGTGGGTACTTTAC
CCCCCTTTGGTCTCTGTTTTTTTTTTTCCGCACTTTTCCTTGTAATTTTT
TATGACAGCTCTTCATATGTTTTCACCTTCTTCTTTCCTTCGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_d01.g1 MSMg01no413_d01.g1 CHROMAT_FILE:
MSMg01no413_d01.g1 PHD_FILE: MSMg01no413_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:48 2005
         (415 letters)



>mm_chr1_196999180_196999994
          Length = 815

 Score =  687 bits (355), Expect = 0.0
 Identities = 361/363 (99%)
 Strand = Plus / Minus

                                                                       
Query: 53  gatggccgactaggccatcttctgatacatatgcagctagagacacagttcggggggggg 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gatggccgactaggccatcttctgatacatatgcagctagagacacagttcggggggggg 756

                                                                       
Query: 113 gtactggttagtttatattgttgttcctactatagggttgcaggcccctttagttccttg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gtactggttagtttatattgttgttcctactatagggttgcaggcccctttagttccttg 696

                                                                       
Query: 173 ggtactttctctagctcctccattgagggctctgtgttccatccaatagatgactgtgag 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ggtactttctctagctcctccattgagggctctgtgttccatccaatagatgactgtgag 636

                                                                       
Query: 233 catccacttctgtatttggtaatggcctttatttcattgctaatgacaagttcttttctc 292
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 catccacttctgtatttggcaatggcctttatttcattgctaatgacaagttcttttctc 576

                                                                       
Query: 293 tgatatatcagaaagcttttactagctattttggggtttctttactctagtttgttaaaa 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgatatatcagaaagcttttactagctattttggggtttctttactctagtttgttaaaa 516

                                                                       
Query: 353 taagaaagcaaatataatgagaagtacagtactagagaggttgaggtagaaggactctaa 412
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 515 taagaaagcaaatataatgagaagtagagtactagagaggttgaggtagaaggactctaa 456

              
Query: 413 gat 415
           |||
Sbjct: 455 gat 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)