CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAGATAATACAAGGAATTATACCAGGTTGTTTTACTTGAGTCTGGAT
AGACTAAAGCTTTATTGCATCTACCAGATGGATACGGGGACTACAGAATT
ATAAAAGTCCACAGCTATCTGAATGAATATGGAATTTCTCTTCACTAAAT
TCCTACCAGTTTTAATCACCAAGGACCACTCTTGTCAGATGTTAAGGTTA
ACTTCTGGAAAGAAGACTTGACTTTGGATGGATGTTTTTAAAGTAGGGTC
CTGTTTATATAGAATGCATAAAGGATATGAGGGTTGACAAAATGCTAAAG
GAGACATTAAATTTAGAGAAAATAAAGTGGCAGTCATAAGTAGGATCATA
AAAGGAAGACACATATCAAGACCAATACCTAAACATAATAAAAGCAATAT
ACAGCAAACCAGTAGCCAACATCAGAATAAATAGAGATAAACTCGAGGCA
ATCCCACTAAAATCAGGGACTAGACAAGGCTGTCCACTTTCTCCCTACCT
ATTCAATATAGTACTTGAAGTCCTAGCCAGAACAATTCGACAACAAAAGG
AGATCAAGAGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTATTT
GCAGTTGATATGATAGTATATATAAGTGACCTCGGAAATTCCACCAGAGA
ACTCCTAAACCTGATAAACAGCTTCAGTGTAGGAGCTGGATATAAATTAA
CTAAAACAAATCCATGGGCTTTCTCTACCTAA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGATAGAGTATCCTCCAAACTCTAAA
TCTTGAATATTTGAATACAACTCTAAGATTACCAAATTATCTAGCCATGG
CATTCTGTCTTCATTGGGGTTTTACTGAAGAGAAACTGGGACCATGGCAA
TACAAAGGAGAACAGTGATTGGGACTACCTTGCAGTTCAAAGTTTATGTG
CATTATTGTCATTGTGGGAAGAAGCACTGTGGCTTGCTGGCACGTATAGT
GCTAAACTGGTAATTCAGAGTTCTACATTTGAATCCACAGGAAGCAACAA
GAGACTAGGAGCCATCAGGTATGGATTGCGCTTCTGAAATCCTGATAATC
CGTGACAACATACTTCTTCAAACAAGATCACATCTTCTCAAAGTCATAGC
TCCTCATATTTTCAATCACTATGGAGTCTATGGGGAACATTTTCTTTCTT
TCTTTTTTTTCTTTTTTTTTTTTTTCAGACCCAACTTGGGGCAGTTTGTT
TTTTTAAATTAGGTATTTTCTTCATTTATATTTCAAATGCTATCCCAAAA
GTTTCCCATACCCTCCCCGGCTCCCCCCCCCTCATTTCTTGGTCCTGGGA
TTCCCCTGTACTGAGGGATAATAAGTTTGGCAGACAAAGGGGCCTCCCTT
CTCCTGGAGGGCCACTTAAGCCTCTTTCTGTGGTTATTCAGCTATAGAAA
CGGCCCTCTGGGGAAATGAATAATTATAATTGA

Query= MSMg01no414_b16.b1 MSMg01no414_b16.b1 CHROMAT_FILE:
MSMg01no414_b16.b1 PHD_FILE: MSMg01no414_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:00 2005
         (572 letters)



>mm_chr1_27231826_27232798
          Length = 973

 Score = 1015 bits (525), Expect = 0.0
 Identities = 558/571 (97%), Gaps = 5/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagataatac---aaggaattataccaggttgttttacttgagtctggataga 61
           |||||||||||||  ||   ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagata--acaaaaaggaatcataccaggttgttttacttgagtctggataga 262

                                                                       
Query: 62  ctaaagctttattgcatctaccagatggatacggggactacagaattataaaagtccaca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctaaagctttattgcatctaccagatggatacggggactacagaattataaaagtccaca 322

                                                                       
Query: 122 gctatctgaatgaatatggaatttctcttcactaaattcctaccagttttaatcaccaag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctatctgaatgaatatggaatttctcttcactaaattcctaccagttttaatcaccaag 382

                                                                       
Query: 182 gaccactcttgtcagatgttaaggttaacttctggaaagaagacttgactttggatggat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaccactcttgtcagatgttaaggttaacttctggaaagaagacttgactttggatggat 442

                                                                       
Query: 242 gtttttaaagtagggtcctgtttatatagaatgcataaaggatatgagggttgacaaaat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtttttaaagtagggtcctgtttatatagaatgcataaaggatatgagggttgacaaaat 502

                                                                       
Query: 302 gctaaaggagacattaaatttagagaaaataaagtggcagtcataagtaggatcataaaa 361
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 503 gctaaaggagacattaaatttagagaaaataaaatggcagtcataagtaggatcataaaa 562

                                                                       
Query: 362 ggaagacacatatcaagaccaatacctaaacataataaaagcaatatacagcaaaccagt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaagacacatatcaagaccaatacctaaacataataaaagcaatatacagcaaaccagt 622

                                                                       
Query: 422 agccaacatcagaataaatagagataaactcgaggcaatcccactaaaatcagggactag 481
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 623 agccaatatcagaataaatagagataaactcgaagcaatcccactaaaatcagggactag 682

                                                                       
Query: 482 acaaggctgtccactttctccctacctattcaatatagtacttgaagtcctagccagaac 541
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 683 acaaggctgtccactttctccctacctattcaacatagtacttgaagtcctagccagagc 742

                                          
Query: 542 aattcgacaacaaaaggagatcaagaggata 572
           ||||||||||||||||||| ||||| |||||
Sbjct: 743 aattcgacaacaaaaggaggtcaaggggata 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space:   541206
Effective search space used:   541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)